Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02352 ATGATGCACTCTCATCATGTTCCTAAGTCCCTTTGGTCATTCCTTGAAGAGAATAGCTCAACTCTTGAATTTCATCAATTTGTTGAGAACTATGGCTTCATGGTTGATAATTCACATATGGGTAATTCAGGATTCAATTTCACTAATAATAATCCTTTATTCAATATTCCACATAATAATACTATTACTTCTTCTAATGTTTCTTCTATCCCTTATTCCAATGATGATACCTTATACCATAACCCCGTTGAGGAAGAAGATTCCTTACAAACACTAATGGATTATTTTTCCATGGAATTGGACAATTCTAACCCCAATACTAATGGAAAAAACCAAAGTTACCAAGAAGAAAGTGGTGAGGGTAGCTTTTATCCTTCTTCACAAAACATGATGATTTCTAGTAGTGAAGAAGGGCAAAATGGTAATTGGAGTCCTACCACATCTTTGAATTCAGATTTGTCCTCATCAACACATCAATTTCAGCAACTTTTCTTGCCTCAACTAGGCATGGAAATTGACAAGAGGGTGGTGCTTCCACACATGGTGGAAGCCATTGGAGAAGCTCTTGGAAAAGGTCACAAATCACAAGTTGAAGAGATCTTGAGAAGCATGCGCAACAAAGCTAGCCCAATTGATGAACCATTTGAGTTCTACTTGTCCCAAGGTGGTGGTGGTGATTATCTAAAACAAGAGGCTATTAAACACTTTGAAGATTTGTTTAGAGCCTTGTACCAAGGAACCCCACATGGAAAAGTTGCAAACTTTGTTGCTAATTCATCAATTCTTGAAGCTATACCCCATGATTGTGATGTTATACATATATTTGACTTTGATTTGGTCAATGGGATTCAATGGCCTTCTATGATTGAGGCAATTGCACCCTTGAACAAAACATTGAAATTGACTTCAATCAAGAGTGTTGAGGAAGGGTATGAATGTAATTTCCCTCAGTGGAACTTTGAGGAAGTTAAAAGGAGCCTCTATGAGCATGCAAGATCCTGTGGGTTTTTGAAATTGAAGGTGGAGGAGAAGGGAATAGAGGAAGTGGTTATGGAGATCAAGAAAGTGAACAAAAGGGGTGGTAAAAAGGAGTTTTTTGCCTTCAATTGCATGGTGGGCCTACCACATATGGGGAGAGAAAAGAGTAGAAAACGTGTCATGGAGTTTCTAAATTTGATCCATTTTTGTGGAAATAAAAGGGCAATTTTGACTTTTGGTGATGGGGGTGCTTATGACAAGTGGGGAAAAAATGGATTTGATTTCAAGTCATTTTATGATGCAAATTTGGTTCATTACAAGGCCTTGTTGGAATCAATTGAGTCACACTTCCCAACTTCTTCAGAAGCAAGAGCTGCTATTGAGTGCTTATTTTTGGCACCTAATGTTTCTTCTCTCTCATGGTTGCAACAGTGGGAGGAGATCTCAGAGGGTTTCAATTTTCATGCAGGATTTGGATTGGATGGTTGTGGATTTAGCAAAAGTAATTTGATGGAAATTGGAGAGTTGATGGAGGGGTGTGATGATTCATATGGGGCCAAAATTGGAGGGCAAAATGGGAATGAATTAGTGTTGCTATGGAAAGGAATCCAGCTTCTAAGGGTTTCAACATGGAGAAATTAA 1620 0.3827 MMHSHHVPKSLWSFLEENSSTLEFHQFVENYGFMVDNSHMGNSGFNFTNNNPLFNIPHNNTITSSNVSSIPYSNDDTLYHNPVEEEDSLQTLMDYFSMELDNSNPNTNGKNQSYQEESGEGSFYPSSQNMMISSSEEGQNGNWSPTTSLNSDLSSSTHQFQQLFLPQLGMEIDKRVVLPHMVEAIGEALGKGHKSQVEEILRSMRNKASPIDEPFEFYLSQGGGGDYLKQEAIKHFEDLFRALYQGTPHGKVANFVANSSILEAIPHDCDVIHIFDFDLVNGIQWPSMIEAIAPLNKTLKLTSIKSVEEGYECNFPQWNFEEVKRSLYEHARSCGFLKLKVEEKGIEEVVMEIKKVNKRGGKKEFFAFNCMVGLPHMGREKSRKRVMEFLNLIHFCGNKRAILTFGDGGAYDKWGKNGFDFKSFYDANLVHYKALLESIESHFPTSSEARAAIECLFLAPNVSSLSWLQQWEEISEGFNFHAGFGLDGCGFSKSNLMEIGELMEGCDDSYGAKIGGQNGNELVLLWKGIQLLRVSTWRN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02352 539 ProSiteProfiles GRAS family profile. 169 538 IPR005202 -
Aip02g02352 539 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 538 IPR005202 -
Aip02g02352 539 Pfam GRAS domain family 230 538 IPR005202 -
Aip02g02352 539 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 24 538 - -
Aip02g02352 539 MobiDBLite consensus disorder prediction 100 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02352 Aip-Chr2 96432776 96434444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02352 240 538 GRAS Transcription Factor Family AT3G60630 26.543 4.03e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip02g02352 GRAS 4.5e-29 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02352 - - aip:107628481 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02352 02 96432776 96434444 Aip02g02352 02 96432776 96434444 ECH