Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02336 ATGGATTGCATTGATCCAAGTGGTAACACCATCACATGTGCATCAATAGAAGAACAAGGCTCATCTTCAAACCCAAACAACAAGAGGAAGAAAGGTAATGCTATGAACAACAATAAGAGGAAGAACAAGGGAGTGATGAAACTCTCAACTGACCCACAAAGTGTGGCAGCAAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGCAGCAAGATGGACACTGTTTCTATGTTGGAAGAAGCCATTCACTATGTTAAGTTCCTCAAGGCTCAGATTTGGCTTCACCAAACTTTGATGATGAACTATGATCATGTGAATAACAACAATAATAATAATGATAATAGTATAAATGATCAGTGCTATTATTATTGTTACCCTGCTGATCAGGACATTGTTGTTCCTCTTCATCAGCAACAAAATGTTTCTTCATCAGTTTTTGAGACCTTACCGGAGCTACCATTATCTCAGTGTTGCATTCAAGGTGATGAAGCCACTACCAATATTGATCCTTCTGTTTTGAAAAATTGGTGGCCACCTTATTAA 570 0.393 MDCIDPSGNTITCASIEEQGSSSNPNNKRKKGNAMNNNKRKNKGVMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKAQIWLHQTLMMNYDHVNNNNNNNDNSINDQCYYYCYPADQDIVVPLHQQQNVSSSVFETLPELPLSQCCIQGDEATTNIDPSVLKNWWPPY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02336 189 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 29 172 IPR045843 GO:0003700|GO:0006355
Aip02g02336 189 Pfam Helix-loop-helix DNA-binding domain 58 97 IPR011598 GO:0046983
Aip02g02336 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 110 IPR036638 GO:0046983
Aip02g02336 189 CDD bHLH_AtIND_like 49 109 - -
Aip02g02336 189 Gene3D - 51 123 IPR036638 GO:0046983
Aip02g02336 189 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 29 172 - -
Aip02g02336 189 MobiDBLite consensus disorder prediction 17 49 - -
Aip02g02336 189 MobiDBLite consensus disorder prediction 17 60 - -
Aip02g02336 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Aip02g02336 189 SMART finulus 54 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02336 Aip-Chr2 96178255 96178824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02336 39 115 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 55.844 3.94e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g02336 HLH 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02336 - - adu:107475363 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02336 02 96178255 96178824 Aip02g02336 02 96178255 96178824 ECH