Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02269 ATGGAAATGGGTTCGAGCCCCCGCACCGTTGAAGAAATCTTCAAGGATTACTCTTCTCGCAGAACCGCCATCGTTCGCGCTTTAACTCAAGATGTTGATGAATTTTATGGGCTCTGCGATCCAGAAAAGGAGAACTTGTGCCTTTACGGACATCCAAATGAGTCCTGGGAAGTGACCCTGCCAGCTGAGGAAGTTCCACCAGAGCTTCCAGAGCCGGCTCTGGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGATTGGCTTTCTCTAGTTGCTGTGCACAGTGATTCGTGGTTGCTCTCAGTTGCCTTTTATCTTGGAGCCCGACTTAACCGCAATGAGAGGAAGCGTTTGTTTAGCTTGATCAATGATCTTCCAACTGTTTTTGAAGTTGTAACTGAAAGGAAACCAGTAAAGGACAAGCCAGCTGCAGACAGTGGAAGCAAATCGCGGGGCAGCACAAAGAGATCAAGTGACGGGCAAGTCAAAAGCAACCCGAAGTTCGATGAGGGTTATGAGGAGGAAGACGACGAGCACAGCGAAACTCTTTGTGGGAGCTGCGGCGGAAACTACAACGCGGACGAATTTTGGATTGGGTGCGACATATGCGAGAGGTGGTTCCATGGAAAATGTGTGAAGATCACACCGGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCATGAGAAGGGGCAGGCCTTGA 714 0.493 MEMGSSPRTVEEIFKDYSSRRTAIVRALTQDVDEFYGLCDPEKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPAADSGSKSRGSTKRSSDGQVKSNPKFDEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRGRP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02269 237 SUPERFAMILY FYVE/PHD zinc finger 173 235 IPR011011 -
Aip02g02269 237 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Aip02g02269 237 CDD PHD_AL_plant 184 234 IPR044104 -
Aip02g02269 237 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Aip02g02269 237 PANTHER CPG BINDING PROTEIN 3 233 IPR045104 GO:0006355|GO:0042393
Aip02g02269 237 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 233 - -
Aip02g02269 237 MobiDBLite consensus disorder prediction 138 173 - -
Aip02g02269 237 MobiDBLite consensus disorder prediction 148 162 - -
Aip02g02269 237 Pfam PHD-finger 185 233 IPR019787 -
Aip02g02269 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 232 IPR013083 -
Aip02g02269 237 SMART PHD_3 184 232 IPR001965 -
Aip02g02269 237 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02269 Aip-Chr2 94732803 94736937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02269 5 236 Alfin-like Transcription Factor Family AT5G05610 78.298 3.49e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aip02g02269 Alfin 3.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02269 - - gmx:100793126 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02269 02 94732803 94736937 Aip02g02269 02 94732803 94736937 ECH
Aip04g02133 04 99245338 99249798 Aip02g02269 02 94732803 94736937 PCT