Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02265 atggaccaggtgcctgatgtcctagacaACGAGGCAGTAGGGGTAGTGGTGGTGACAGCAGGAGTGGTAATGATAGTAGGACGGGTGGAGATGGAGGTGCAGCCTGAGTTGGAGCTTGTGTTGGATTTCGAGGAGTGTCCGGTACTGGGGAGGGTGGTGCGGTGGGTACTGGGGAGGGGAGGTAGTGTAGCTACCGGAGGAGGTAGAGGTGGGCAGGATGATAGTAATGGTGAGGACGACAGTGGTGGTGATGGGGATGACGGAGGTGATGACAATGGTCAAGGAGGTGGAGGAGGTGGTGACGGTAGTGGAGGGTACAATGGTGGGAGCAGAGGTGGTGGAAGTTTAGGGGGTTCAGGGGGACACCACGGTGGAGGTAGTGGTGGTGGTGGGTTTAGCGATTTAGGTGGTCGTGGTCAGCCTGGAGGAGGTAAGGGTCAACCAGCTAGAGGTGATGCAGGGGAGGGGAGCCATTTCTACACTCTACTCAGTATTATGGCTGTTATAACCACAACAAGGAGGAGTGAACGTTTCCGGCGAACAACACCACCGACATGTACGTATTGGCTAGCTGGGAGATGCAACCGAAATCCTTGTAGATTTTCGCATAGCTCACCAACATTGCCATCGAATGCATACTATAATGGCAATACCACATATAAGCATTCAAAGCAACCAACAAATTGCGCATCGAAGGCCCTCGAGAAGCCAGCAAATCGTGCACCAATGGCTGTTGTGTCTGTTGAGAAGCCAACCAAGTGTGAACCAATGGCTATGTCTGATGAGAAGATTACAGTGTGTGGACTAGAGGCTGTGTCCGTTGAGAAGCCAACCAAGTGTGAACAAAAGGCTGTATTAATTGAAAAGACCGCAGATGTGGAAGATGTGGACACTGTTGTTGCTAAGGCTCCTGTGGAGAAATCACGAAGTATTTGTAAATATTGGATGACTGACACTTGTGTGCATGGTGACCTGTGCCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAAGAAGGCTGTAACCGGGATTGCATTGCCGGCTGGTTCGGACAAACTTTATTCTGGCAGCACTGATGGCACAGTTCGAGCCTGGGACTGCAACACTGGCCGCTGTCTTGGTGTGATAAACCTTAATTCTGAAGTTACCTCGTTGGTATCTGAGGGCTCATGGATATTTGCCGGTGTGAAGAATGCTGTGAAGGCATGGAATATTCAAACCGGTGCAGATTTTACTCTTGATGGACCTATGGGGCAAGTCCTGTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGAGTCAGCTCTGATCCCAAAGCTGAGTCTCCTTTCGAACTGGTTGCAACACTGAGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGGTCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTACAGTGCACAATGACACTTAATGGACATTCTGAGGTAGTCACATCACTTATTTGTTGGGACAATTACTTGTTATCGAGTTCTTCTGATTGCACGGTCAATGTTTGGGTGTGCACTGAGGAGGGAATTCTGAAGGTGGCATACACTCACACTGAAAAAAATGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCGAAACCAATATTATTCTGCTCGTGCAAAGATAATTCAGTTCGTATATATGAATTGCCGACGTTTTTAGAGAGAGGTCGACTGTTTACAAGACAAGAAGTTCAATCCTTTGAGATAGGCCCTAACGGACTCTTCTTTACTGGAGATGGGACTGGTTTGTTGAATGTGTGA 1881 0.4716 MDQVPDVLDNEAVGVVVVTAGVVMIVGRVEMEVQPELELVLDFEECPVLGRVVRWVLGRGGSVATGGGRGGQDDSNGEDDSGGDGDDGGDDNGQGGGGGGDGSGGYNGGSRGGGSLGGSGGHHGGGSGGGGFSDLGGRGQPGGGKGQPARGDAGEGSHFYTLLSIMAVITTTRRSERFRRTTPPTCTYWLAGRCNRNPCRFSHSSPTLPSNAYYNGNTTYKHSKQPTNCASKALEKPANRAPMAVVSVEKPTKCEPMAMSDEKITVCGLEAVSVEKPTKCEQKAVLIEKTADVEDVDTVVAKAPVEKSRSICKYWMTDTCVHGDLCQNLHSWFYGDGFSTLAKLHEHKKAVTGIALPAGSDKLYSGSTDGTVRAWDCNTGRCLGVINLNSEVTSLVSEGSWIFAGVKNAVKAWNIQTGADFTLDGPMGQVLSLNVGNDILLAGAEDGVIYAWRVSSDPKAESPFELVATLSGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLDTLQCTMTLNGHSEVVTSLICWDNYLLSSSSDCTVNVWVCTEEGILKVAYTHTEKNAVLGLYGMTDAEAKPILFCSCKDNSVRIYELPTFLERGRLFTRQEVQSFEIGPNGLFFTGDGTGLLNV 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02265 626 SUPERFAMILY CCCH zinc finger 306 331 IPR036855 GO:0046872
Aip02g02265 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 540 IPR001680 GO:0005515
Aip02g02265 626 SMART WD40_4 337 376 IPR001680 GO:0005515
Aip02g02265 626 SMART WD40_4 504 541 IPR001680 GO:0005515
Aip02g02265 626 SMART WD40_4 416 453 IPR001680 GO:0005515
Aip02g02265 626 SMART WD40_4 544 588 IPR001680 GO:0005515
Aip02g02265 626 SMART WD40_4 463 501 IPR001680 GO:0005515
Aip02g02265 626 SMART c3hfinal6 180 205 IPR000571 GO:0046872
Aip02g02265 626 SMART c3hfinal6 307 332 IPR000571 GO:0046872
Aip02g02265 626 ProSitePatterns Trp-Asp (WD) repeats signature. 488 502 IPR019775 -
Aip02g02265 626 PANTHER - 178 626 IPR044715 -
Aip02g02265 626 ProSiteProfiles Zinc finger C3H1-type profile. 306 333 IPR000571 GO:0046872
Aip02g02265 626 Pfam WD domain, G-beta repeat 465 501 IPR001680 GO:0005515
Aip02g02265 626 Pfam WD domain, G-beta repeat 340 376 IPR001680 GO:0005515
Aip02g02265 626 Pfam WD domain, G-beta repeat 506 540 IPR001680 GO:0005515
Aip02g02265 626 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Aip02g02265 626 PRINTS G protein beta WD-40 repeat signature 488 502 IPR020472 -
Aip02g02265 626 PRINTS G protein beta WD-40 repeat signature 528 542 IPR020472 -
Aip02g02265 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 510 IPR001680 GO:0005515
Aip02g02265 626 MobiDBLite consensus disorder prediction 60 156 - -
Aip02g02265 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 470 504 - -
Aip02g02265 626 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 178 626 - -
Aip02g02265 626 Gene3D - 310 602 IPR015943 GO:0005515
Aip02g02265 626 SUPERFAMILY WD40 repeat-like 341 625 IPR036322 GO:0005515
Aip02g02265 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 385 IPR001680 GO:0005515
Aip02g02265 626 ProSiteProfiles Zinc finger C3H1-type profile. 180 206 IPR000571 GO:0046872
Aip02g02265 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02265 Aip-Chr2 94653684 94673478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02265 347 560 Eukaryotic Initiation Factors Gene Family AT2G46290 23.707 3.58e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02265 - - ahf:112726849 745.347