Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02223 ATGACTCGCTGTAGTGCTCCGCCCTCATCATCGCCGCCGAGGCCAACACCTATTCCGGCCAAATTCTGGCGTGCATGTGCTGGAATCTCTGCACAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGACCAAGCTGCTTCGCAACCGCGAAACCTTTCACCTCTAGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTTTTTCGCGGACCCTAAGACCGACGAGGTCTTCCTCAAGATTCTTCTCCTTCCTGTCACCGATGGATCCGCTCAGGATTTTCTTCCACCTGCCGTGGCCGCCGAAGGCAGCGGCAACGGCAATGGTGACGATGAAAAGGTTGAGTCGTACGCCAAGATTCTCACGCGAGGACCCGCCGGTGAGACGCTTCGCATAACCGACCTCCACGGCGCCGTTTGGGAGTTTCGCCACATCTACCGCGGGACGCCGAGACGGCACCTCTTCACTTCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCTGGCGATACTGTGGTCTTCATGAAGGACTCCGATGGCAGGATGTTTGTCGGAATCCGCCGCAATATGTCGTCAGACGACGGTATCTCAGACGGCGGATTGGATTGGTTAGCAACGATAGTTGGGATGGACGAGGGGGAAAAGGAAAAAGAAGAGAAAAATGAAGAGGTGATAATGGAAGGGTTTGCAAGAAACGGGAAGGGGAGGGTGAGTTCGGCTTCAGTGGCGGAGGCGATGGAGCTGGCGGCCCAGAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGGGTTGGGGGGAGTTTGTGGTAAAGGCAGAGGATGTAGACGTGAAGATGAATGGTATTTTCTGCAGTGTTGGGATGAGAGTGAAGATGGCCAGAGAGAACTACGATTCTTCACGGATGACTTGGTTTCAGGGAACAGTTTCTGGTGTTACTGTTCCCGGTGAAGCTCAACCATGGAGCGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCTGAAATCTTGAAGAATGTAAGTCCCGTTAGTCCATGGCAGGTGGAGTTTCTTTCTGACACACCTTCACTTCCTCAAGTATTTCCCCCGACAAAAAAATTCAGAATTGCAGACGGTTCTTCTAAAATTTTCAGTCATGAAGTGGAAGAATCTTCCTTTTCCATGACAAGACTTGCTATTCCTGATTTAGCAATGGGAGTGCTGAATCAAACATTGTTGATGAGTAATTATGGCACCCCTTTTCCTGCTAGCATTCAGGGAGTCAGGCATCCTCTACTTTCTGCACCTACTTGTCCCATTTTTCCGATTAATCCTCCTCTGTCTATTGCTAACTCCTTTAAGAATAACATTAGACCAAGGTTAAATGCTATGTTGCCAGAGCCTAATATTAACACTCATAAACCTGAAAGCTTATCTCCACATAACAAGTCTAGTTTGACTCCTAACAGCAACTCAACCAAATCTGGGACTGCTTCTTTTCAACTATTTGGTTGTACTATTCAAACAGATCAAGAAATTGATGACCAATTGATGACCATAGCACCGCTAAAAATGACGCAGGAAAAGACAACGTATAATAGAGGCATTGACAAACCAATTACATAG 1644 0.4842 MTRCSAPPSSSPPRPTPIPAKFWRACAGISAQAPVVNSRVYYFPQGHIDQAASQPRNLSPLVYSRPVIPCRVAAVNFFADPKTDEVFLKILLLPVTDGSAQDFLPPAVAAEGSGNGNGDDEKVESYAKILTRGPAGETLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGIRRNMSSDDGISDGGLDWLATIVGMDEGEKEKEEKNEEVIMEGFARNGKGRVSSASVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVKMNGIFCSVGMRVKMARENYDSSRMTWFQGTVSGVTVPGEAQPWSGSPWRMLQITWDESEILKNVSPVSPWQVEFLSDTPSLPQVFPPTKKFRIADGSSKIFSHEVEESSFSMTRLAIPDLAMGVLNQTLLMSNYGTPFPASIQGVRHPLLSAPTCPIFPINPPLSIANSFKNNIRPRLNAMLPEPNINTHKPESLSPHNKSSLTPNSNSTKSGTASFQLFGCTIQTDQEIDDQLMTIAPLKMTQEKTTYNRGIDKPIT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02223 547 PANTHER AUXIN RESPONSE FACTOR 13 133 - -
Aip02g02223 547 SUPERFAMILY DNA-binding pseudobarrel domain 132 199 IPR015300 -
Aip02g02223 547 MobiDBLite consensus disorder prediction 478 499 - -
Aip02g02223 547 PANTHER AUXIN RESPONSE FACTOR 135 524 - -
Aip02g02223 547 ProSiteProfiles B3 DNA-binding domain profile. 138 201 IPR003340 GO:0003677
Aip02g02223 547 Gene3D - 93 201 IPR015300 -
Aip02g02223 547 MobiDBLite consensus disorder prediction 470 499 - -
Aip02g02223 547 Pfam B3 DNA binding domain 135 200 IPR003340 GO:0003677
Aip02g02223 547 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 133 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip02g02223 547 SMART B3_2 87 201 IPR003340 GO:0003677
Aip02g02223 547 CDD B3_DNA 136 199 IPR003340 GO:0003677
Aip02g02223 547 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 135 524 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip02g02223 547 Gene3D - 295 368 - -
Aip02g02223 547 Pfam Auxin response factor 256 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02223 Aip-Chr2 93726845 93729774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02223 23 518 B3 DNA Binding Superfamily AT1G77850 39.114 2.50e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip02g02223 Auxin_resp 5.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02223 - - adu:107475253 882.478