Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02208 ATGTATGCAACTATTGCCTATAGCTTATTAGAAGAAGAAGAAGAAATGAACAGGGGAATTGAAGTTCTGTCTCCGGCTTCTTACCTTCACAACTCAAATTGGTTGTTCCAAGAGAGTGCAGGAACCAAATGGACACCACAAGAGAACAAGCAATTTGAGAACGCTTTGGCGCTCTTCGACAAGGAGACGCCGGACCGGTGGCTGAAGGTGGCGGCTATGATCCCGGGGAAGACGGTTGGTGATGTGATCAAACAGTATAGGGAGTTAGTTGAAGATGTTAATGTAATTGAATCTGGGTTCATACCAATTCCAGGGGGAACTACTGATGGTTCTTTCACATTGGAGTGGGTTGATAATCATGAATTTGATGGGTTTAAGCAATTCTATGGTGTTGGTTGCAAAAGGGGTTCTTCCACTAGGCCTTCTGAACAAGAAAGGAAGAAAGGTGTACCATGGACGGAAGAAGAGCACAGGCTATTTTTGATGGGTTTGAAGAAGTATGGTAAAGGTGATTGGAGAAATATATCTCGAAATTTTGTTACAACAAGGACGCCGACGCAAGTTGCAAGTCATGCTCAGAAATACTTTATCCGGCAACTTAACGGCGGCAAGGATAAGCGGAGATCCAGTATCCATGATATCACAATGGTTAATCTCCCTGAAACAAAGTCGCCTTCGTCGGAAAGTAACAAACCTCCTTCTCCAGATGCAAATTTGAATCAGAATCAGAAGCTTTTGTCAAGCATGGTTAAACAGGAATATGACTGGAAATCACCACCATATGAGGGTGTGCCTTTGCTGTTTGATTCAACAAATGGAAATTCGTTCATGACACCTTTGTGTGGAGCTTCTTCATACGGATCTAAACCTCAGGAGCAGTATTTACTCAGAGGAACTTTCCATGGATTTCAATTTGGACCTTATGATACTTTTATGCAAATGCAACCTCAGTGA 954 0.4256 MYATIAYSLLEEEEEMNRGIEVLSPASYLHNSNWLFQESAGTKWTPQENKQFENALALFDKETPDRWLKVAAMIPGKTVGDVIKQYRELVEDVNVIESGFIPIPGGTTDGSFTLEWVDNHEFDGFKQFYGVGCKRGSSTRPSEQERKKGVPWTEEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLNGGKDKRRSSIHDITMVNLPETKSPSSESNKPPSPDANLNQNQKLLSSMVKQEYDWKSPPYEGVPLLFDSTNGNSFMTPLCGASSYGSKPQEQYLLRGTFHGFQFGPYDTFMQMQPQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02208 317 MobiDBLite consensus disorder prediction 203 240 - -
Aip02g02208 317 SUPERFAMILY Homeodomain-like 145 199 IPR009057 -
Aip02g02208 317 ProSiteProfiles SANT domain profile. 39 94 IPR017884 -
Aip02g02208 317 ProSiteProfiles SANT domain profile. 152 200 IPR017884 -
Aip02g02208 317 CDD SANT 43 90 IPR001005 -
Aip02g02208 317 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Aip02g02208 317 Gene3D - 150 200 - -
Aip02g02208 317 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 244 IPR043363 -
Aip02g02208 317 CDD SANT 151 196 IPR001005 -
Aip02g02208 317 Pfam Myb-like DNA-binding domain 151 196 IPR001005 -
Aip02g02208 317 Pfam Myb-like DNA-binding domain 43 89 IPR001005 -
Aip02g02208 317 PANTHER TRANSCRIPTION FACTOR DIVARICATA 16 244 - -
Aip02g02208 317 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 147 199 IPR006447 GO:0003677
Aip02g02208 317 Gene3D - 36 103 - -
Aip02g02208 317 ProSiteProfiles Myb-like domain profile. 144 196 IPR001005 -
Aip02g02208 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 200 IPR017930 -
Aip02g02208 317 SMART sant 40 92 IPR001005 -
Aip02g02208 317 SMART sant 148 198 IPR001005 -
Aip02g02208 317 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02208 Aip-Chr2 93097627 93100764 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip02g02208 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02208 - - gmx:778077 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02208 02 93097627 93100764 Aip07g00912 07 10944168 10946212 ECH
Aip02g02208 02 93097627 93100764 Aip02g02208 02 93097627 93100764 ECH
Aip02g02208 02 93097627 93100764 Aip07g01531 07 27833195 27834764 ECH
Aip02g02208 02 93097627 93100764 Aip01g00430 01 5514319 5516973 ECH