LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g02192	ATGCCTTCAAAATCCACCACCACCACAAGTAGTTCATCATCAGAGCgaagatggatctacgatgtgttcttgagtttcagaggaaccgacactcgcactatcttcatttctcatctctacaactccctcacaaacgcaggaatctacgttttcaaggacaacgaggagcttcgcaaaggaggccaggtttcatcgttactcatgcaagcaatccaagtttctagaatctccatcgttgttttctcaaagaactacgcgaactccaagagttgtctgaaagagctgcagagaattatggattgtcgaagaagcataggccaagttgtttttcctgttttctacaacgtagaaccctctcatgtgCGTCATCAGAGAGGTGCCTTTGGAAGAAGCTTTCAGGATCTTAAGAAAACAATTTCAAAGAACAAAGCTCAACTTTGGGGTACTGCGCTTCGTGATGCTGCTAGTTTGACCGGATTTCATCTCAATAATTCCAGGAATGAAAGTGAAGATATCAATAAAATCATTGAAACTATCACTGATTCGCTGGACAATACAGTCTTGTTTGTTGCACAACATCCAGTTGGAGTACAACCTCGTGCTCAACATGTGATTAAACTATTGAACTACCAAGAATCAAAAGATGTCATGCTATTGGGGATCTTGGGAATCGGAGGGATTGGGAAAACAACCATTGCCAAAGCCATTTACAATCAGATTCACCCCCATTTTGAGTCTTATTGCTTTCTTTCAAACATCAGAGAATTCTGGGAGCAGAGTACTACCAGTCAAGTGTATTTACAAGAAAGGCTTCTTTCTGATATTTATAAAACAACAAAGATCAAAATACATAACATTGAATCAGGCATATTCATTTTGCAACAAaggcttcgtcataaacaagcactcctcatactcgatgatgttgataagatagagcaactaaaagccttgtgtggaagccgcgaatggttcggtcctggaagtagaataatcatcacaacaagagatgaacatttactcaaactgctccaggttgatcacatatctagaatgccggaaatggatcaagacgaatctattcaacatttcagttggcatgcattcaaacaaccatgtcctagagaagatttcgatcaactttctagaaatgtggttgcatattgtggaggactacctttagctcttgaggttattgggtcatttttgtttgataagaaagtaagagaatgggaaagtgtggtggataagctgaaaagaattcccaatgatcaagtacagagaaagttgagaataagctttgatagtttgaatgatgatacagagaaagaaatatttcttgacattgcgtttttctttattgggatggaccgaaatgatgtagtacatattttagatgaatatgatgctgcgattggaatcagtgttcttgtagatcgaagccttgtcaccattgacaataataacaagcttggaatgcatgatttgctacgagatatggggagagaaattgttcgcgagaaatcaccaaaggagccagaggaacgtagcagattatggttgcaaaaagatgtgtaccatgtattgTCAAATCATATGGGGACAAAAGCTATCGAGGGATTGACTTTAAAGTTGACCAATTCGGTTAGTTTGGAGGCAAAAATGTTTAAGATGATGAAGAGACTTAGATTACTTCAACTTGCTGGTGTGCAACTAGATGGAAATTTTGAGGATCTTCCGAAACATCTAAGATGGCTTCATTGGCATGAATGCTATTTGAAGTACATACCTTCCAACTTTGATCAAGCAAGTTTAGTTGCCATTGAATTAGAATTCAGCAATCTCAAGTTTGTGTGGAAAGAGGCCAAGTTCATGGAGAAGTTGAAAGTTCTAAATCTTAATCACTCTTATAACTTGACACAAACACCTGACTTTTCATACTTGCCAAATCTTGAAAAGCTGCTACTCAAAGATTGTTCAAGCTTATCTACAATTTCAGACACAATAGGACATCTGAAAAAGATTCTTGTAATAAATTTAGAAGACTGCACAAGCCTTGGCAACCTGCCAAGAAGCTTTTACAAGTTGAAATCTCTGACCACTCTCATCATTTCCGGATGCTCAATGATTGACAAATTGGAAGAGGACTTAGAACAAATGGAGTCATTAATAACTTTGATTGCAGACAAGACTGCAATAACACAAGTGCCATTTTCAATAGTAAGATCAAAAAGCATTGGATATGTTTCTTTGTGTGGTTATGAAGGATTCTCACGTGATGTGTTTCCTTCTCTCATTTGGTCATGGATGTCACCAACAAGTAAATATAACCTCTCATCCATGGTTCAAGCATCTTCTTCAGCACTTATTCCATTAGATTTACCAAAGCTTAGGAGTCTCTGGGTGAAGTGTGAATCTGATCTTCAATTAAATGGAGGTGTAGCAAGAATTTTGGCTACCTTGTTTGCCACATACAACAAGGAACTAGAAGCAACACCAACTACGTCACTAGTCATGGAGAATATCAAAGGTTCAGAAATATTTGATTTGAGCAATCAATCTCACAATTCTGAATCACTCAAGTGCCTTATAATTGAAGTTGGAATGAAGAGTCATGCCACCAACGCCCTTAAGGACAAAATTTTACAGGGTTTGATGACAACAACCAATGAGTTTAGTGACAAGTATTGGTTAACATTCGGTTCCAAAGGTTCTTCTGTGGTATTCGAAGTCCCTCAAATGAATGGGTGCAACTTGAAGGCAGTGACATTGCGTATTCTTTATTCTTCTTCCTCAGAAACCATCTTATCAGAATGTCTTAAAAACGTGTTAATCATAAATTACACAAAGTCCACCATTCAAGTCTATAAACAAGACACACTAGCCTCTCTTGAAGATGAGGAGGGAAAAACCATAACTTCACATATAGAACCCGGTAATAAAGTGGAGATTCTTCTTGTTGGTTACAAATTCATTGTGAAGAGAACAACAGTTTATCTGATATATGATGAACCGGTTGACCACTATGCGGAGCACTATCATGCGGATGTTATTGTTTCAAGTGATAATTACATTATTTCTAGTGATAATAATGATATGGAAAGTGATGAATGTTCTAGTGTTTCTGGTGGTGGTCATGATAGGTCAAAGAAGAAATATTCATGTTTCTATTGGTGTTGGAGATAA	3186	0.2527	MPSKSTTTTSSSSSERRWIYDVFLSFRGTDTRTIFISHLYNSLTNAGIYVFKDNEELRKGGQVSSLLMQAIQVSRISIVVFSKNYANSKSCLKELQRIMDCRRSIGQVVFPVFYNVEPSHVRHQRGAFGRSFQDLKKTISKNKAQLWGTALRDAASLTGFHLNNSRNESEDINKIIETITDSLDNTVLFVAQHPVGVQPRAQHVIKLLNYQESKDVMLLGILGIGGIGKTTIAKAIYNQIHPHFESYCFLSNIREFWEQSTTSQVYLQERLLSDIYKTTKIKIHNIESGIFILQQRLRHKQALLILDDVDKIEQLKALCGSREWFGPGSRIIITTRDEHLLKLLQVDHISRMPEMDQDESIQHFSWHAFKQPCPREDFDQLSRNVVAYCGGLPLALEVIGSFLFDKKVREWESVVDKLKRIPNDQVQRKLRISFDSLNDDTEKEIFLDIAFFFIGMDRNDVVHILDEYDAAIGISVLVDRSLVTIDNNNKLGMHDLLRDMGREIVREKSPKEPEERSRLWLQKDVYHVLSNHMGTKAIEGLTLKLTNSVSLEAKMFKMMKRLRLLQLAGVQLDGNFEDLPKHLRWLHWHECYLKYIPSNFDQASLVAIELEFSNLKFVWKEAKFMEKLKVLNLNHSYNLTQTPDFSYLPNLEKLLLKDCSSLSTISDTIGHLKKILVINLEDCTSLGNLPRSFYKLKSLTTLIISGCSMIDKLEEDLEQMESLITLIADKTAITQVPFSIVRSKSIGYVSLCGYEGFSRDVFPSLIWSWMSPTSKYNLSSMVQASSSALIPLDLPKLRSLWVKCESDLQLNGGVARILATLFATYNKELEATPTTSLVMENIKGSEIFDLSNQSHNSESLKCLIIEVGMKSHATNALKDKILQGLMTTTNEFSDKYWLTFGSKGSSVVFEVPQMNGCNLKAVTLRILYSSSSETILSECLKNVLIINYTKSTIQVYKQDTLASLEDEEGKTITSHIEPGNKVEILLVGYKFIVKRTTVYLIYDEPVDHYAEHYHADVIVSSDNYIISSDNNDMESDECSSVSGGGHDRSKKKYSCFYWCWR	1061

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g02192	1061	Gene3D	Ribonuclease Inhibitor	523	900	IPR032675	-
	Aip02g02192	1061	Gene3D	-	354	438	IPR042197	-
	Aip02g02192	1061	PRINTS	Disease resistance protein signature	218	233	-	-
	Aip02g02192	1061	PRINTS	Disease resistance protein signature	296	310	-	-
	Aip02g02192	1061	PRINTS	Disease resistance protein signature	389	403	-	-
	Aip02g02192	1061	PRINTS	Disease resistance protein signature	646	662	-	-
	Aip02g02192	1061	Gene3D	-	189	349	IPR027417	-
	Aip02g02192	1061	ProSiteProfiles	TIR domain profile.	18	183	IPR000157	GO:0007165
	Aip02g02192	1061	SMART	till_3	19	157	IPR000157	GO:0007165
	Aip02g02192	1061	SUPERFAMILY	"Winged helix" DNA-binding domain	425	529	IPR036390	-
	Aip02g02192	1061	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	29	996	IPR044974	GO:0006952
	Aip02g02192	1061	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	159	IPR035897	-
	Aip02g02192	1061	Pfam	NB-ARC domain	202	424	IPR002182	GO:0043531
	Aip02g02192	1061	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	449	IPR027417	-
	Aip02g02192	1061	SUPERFAMILY	L domain-like	541	852	-	-
	Aip02g02192	1061	Gene3D	-	13	188	IPR035897	-
	Aip02g02192	1061	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	29	996	-	-
	Aip02g02192	1061	Coils	Coil	710	730	-	-
	Aip02g02192	1061	Pfam	TIR domain	20	183	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g02192	Aip-Chr2	92391877	92399705	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g02192	20	740	WRKY Transcription Factor Family	AT4G12020	31.494	7.90e-84	297

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g02192	-		-	ahf:112749677	1311.21