Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02116 ATGTCAAGTATTCAAATGGCTCATGTGGATTTGGAACAAGGAAGAATCCTCCACCACCACCACCACCACCATAGCTCAGTGACTGGGAGTGACATTAGTCTATGCTTCTCTGATGCTGATGATGGAGGCTCATGCTACTCCCACTTCTACTCCACAAATGGTGGTGGATCCTATGATGAAGATTGCTGCTCCTATGGTGGAGCCTCAAATGCTGCAGATGGTGATGGTGATGATGATGATTGTTCAGTTGAGATTGAAATTGAAAGTGGGTTACCTGAGATTAAGGTGCATTTGGCCACCAACAATAAGGTTGAGAGTAGGGATTGCAGGATTTGCCACCTTGGTTTGGAAGGTGATGATGGGAATAATGAATCTGGTGTTCCAATTGAATTGGGTTGTTCTTGTAAAGATGATCTTGCTGCTGCTCACAAGAATTGTGCAGAGGCTTGGTTCAAGATTAAGGGTAATAGGACCTGTGAAATTTGTCATACAATTGCACGGAATGTGTATTCAGCAAGTGAGGACACAACAGAGACATTGAGTGACACTAACAACAACAATAATATTAGTGTCACTGTAAATTTATCGTCTTCTTTGGATTAA 603 0.4229 MSSIQMAHVDLEQGRILHHHHHHHSSVTGSDISLCFSDADDGGSCYSHFYSTNGGGSYDEDCCSYGGASNAADGDGDDDDCSVEIEIESGLPEIKVHLATNNKVESRDCRICHLGLEGDDGNNESGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHTIARNVYSASEDTTETLSDTNNNNNISVTVNLSSSLD 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02116 200 Pfam RING-variant domain 109 162 IPR011016 GO:0008270
Aip02g02116 200 PANTHER ZINC FINGER, RING-CH-TYPE 5 188 - -
Aip02g02116 200 CDD RING_CH-C4HC3_MARCH 109 163 - -
Aip02g02116 200 ProSiteProfiles Zinc finger RING-CH-type profile. 101 169 IPR011016 GO:0008270
Aip02g02116 200 SMART ringv_2 108 163 IPR011016 GO:0008270
Aip02g02116 200 PANTHER OS01G0850200 PROTEIN 5 188 - -
Aip02g02116 200 SUPERFAMILY RING/U-box 103 166 - -
Aip02g02116 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 174 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02116 Aip-Chr2 90778651 90783054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02116 9 187 C3H Transcription Factor Family AT2G37950 42.857 6.30e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02116 - - gmx:100813946 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02116 02 90778651 90783054 Aip07g00926 07 11205539 11209026 ECH
Aip02g02116 02 90778651 90783054 Aip02g02116 02 90778651 90783054 ECH