Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02057 ATGGATGGACAAACTAAATCTTATACTTGTGTTTTTTGTAAGAGAGGATTCTCAAATGCACAAGCACTTGGAGGCCACATGAATATTCATAGAAGAGATAGAGCCAAGCTTAGGCAATCACTTGAAGAGAAAATGTTGCTTCAAATTGATGATGATCAACAAAAAAATAATAATACCAACCATAAGAAGCCATGGAATTTTCTAGAAATAGATGATGATGATGATGATTATGCAATAATCCAAAGGAGCAAAGGAACAATAATTGGTGGTACTTCAGAAATTCCTCATCAATTTCCTCTTCTTGTTGGGGTGCCACATAGTTATAATAATTATATGAATGAGATAAGGAAAGGTATTATTGAAGAAAAGAATATTGAAGTGGATCTTGAGCTTCGTTTAGGGTTTATTGAGCCAAAAGAAGCAGCAACTTTGAGCACTAGGAAATTCTTTTAA 453 0.3355 MDGQTKSYTCVFCKRGFSNAQALGGHMNIHRRDRAKLRQSLEEKMLLQIDDDQQKNNNTNHKKPWNFLEIDDDDDDYAIIQRSKGTIIGGTSEIPHQFPLLVGVPHSYNNYMNEIRKGIIEEKNIEVDLELRLGFIEPKEAATLSTRKFF 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02057 150 Gene3D Classic Zinc Finger 1 66 - -
Aip02g02057 150 PANTHER OS07G0101800 PROTEIN 5 142 - -
Aip02g02057 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Aip02g02057 150 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Aip02g02057 150 SUPERFAMILY beta-beta-alpha zinc fingers 5 34 IPR036236 -
Aip02g02057 150 PANTHER TRANSCRIPTIONAL REGULATOR TAC1 5 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02057 Aip-Chr2 88611746 88612410 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02057 4 43 C2H2 Transcription Factor Family AT3G09290 82.500 6.66e-19 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g02057 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02057 - - adu:107475090 300.056