Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02031 ATGTTGAATCGCGGGTCAAATGTTTCGGCCGAAGGGGGTGGAGATGAGCTGTATTCGCAGCTATGGAAGGCATGTGCGGGACCACTGGTGGACGTTCCTCGTGTTGGAGAGAGGGTCTTCTACTTCCCTCAGGGGCACATGGAACAATTAGAGGCATCAACGAATCAGGAATTGAATCAGAGGATTCCGTTGTTCAAACTTCCCTCGAAGATCCTTTGTCGCGTCGTGAACATTCATTTACTGGCTGAACAAGAAACTGATGAGGTTTATGCACAGATTACTTTGGTGCCGGAATCTAATGTAAGGATCACTGATGAGCCTACGATCCCCGATCCATCCCCTATTGAACCAACAAGGCCAACAGTTCACTCGTTCTCCAAAGTCTTAACTGCTTCAGATACCAGCACCCATGGCGGCTTTTCTGTTCTCAGGAAACATGCCACAGAGTGCCTTCCTGCTTTGGACATGTCCCAACCAACACCGACTCAGGAATTGGTTGCGAAGGATCTTCATGGTTATGAATGGCGCTTCAAGCATATATTTCGAGGTCAACCACGCAGACACTTGCTCACAACAGGGTGGAGTACTTTTGTGACTTCCAAAAGATTGGTTGCTGGAGACACCTTTGTATTCTTGAGAGGGCAGAATGGGGAATTGCGCGTAGGAGTGCGCCGTCTTGCTCGTCAGCAGAGTAACATGCCATCATCTGTAATTTCCAGTCAGAGCATGCACCTCGGTGTGCTTGCTACTGCCTCTCATGCTGTTGCTACTCAGACACTTTTCGTAGTTTATTATAAGCCACGCACGAGCCAGTTCATCATCAGCCTCAACAAGTATTTGGATGCTGTCAACAACAAATTTAGTGTTGGGATGAGGTTTAAGATGAGGTTCGAAGGGGATGATTCTACAGACACTGATAAAAGATTTTCGGGTACCATTGTTGGATTGGAAGATATATCTCCTCATTGGGAAAATTCTAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTGCAGCTGTTCCAAGACCTGATAGGGTTTCCCCATGGGAGATGGAACCCTACGTGGCTCCTGCTCTTACATCCTCAGTTCAACCTGCTGTTGTAAAGGCCAAAAGGCCTCGACCACCAAGTGAACATCCCGATCTCGACACCCAATCGGCTGCCTCAGTTTTCTGGGATTCAGGTCTTACACAGGCTGATATGACACAGCATAGTGTGATGGCCGAAAGTAAAAGGAGTGATACTACCAGCGTGTGGCATCATAAGCAGATCGATATGAATAGTAAAAGCAACAGCAATCTGATGTCAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCCCCCCATTCTTCTTGTCCTTCGCAATTATTTCAGGACACAATGGATGACAGCAAGAGCGTCTCAGCTTGGCCTGCTCCAAATCCACACTCGTCTAGATTGAACAATGATCATGTGCATGATCAGGTTGACAAGGAAAACAAAGCTGAGACTGCTACGAGTTGTCGACTTTTTGGCATTGACCTTATTGATCATTCCCGGAACTCGTCTGCTGTAGAGAAGGCGGCTGCACAGGCGGTAAACGTTCACAGTTTCACCTCTGAAGGCTGTGTGAGCACAGTTTCCAAAACTGAGGCAGGTCAAAAGTCTGATGCCTCGAAGACTGGTAAGGAGAAGAAACAAGAGCAGCAGCAAGTATCGCCAAAAGAGAGTCAGAGCAAGCAGATATGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTCGCAGTAGGTCGTGCCGTGGATCTGACTATGTTGGATGGCTATGAGCATCTTATTGTTGAATTGGAGGAGTTGTTCGACATAAAAGGGCAGCTTCAAGACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAGGGAGATATGATGCTGGTGGGAGACGATCCATGGCCTGAATTCTGCCACATGGTTAGGAGAATTTTTATCTGTTCCAGTCAAGATGTGAAGAAGATGAGCACAGGAAGCAAACTACCAATCTCTTCAATTGAAGAAGGCACTGTAATAAGTTCAGAAACTGCTGAAACATGA 2073 0.4679 MLNRGSNVSAEGGGDELYSQLWKACAGPLVDVPRVGERVFYFPQGHMEQLEASTNQELNQRIPLFKLPSKILCRVVNIHLLAEQETDEVYAQITLVPESNVRITDEPTIPDPSPIEPTRPTVHSFSKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGQNGELRVGVRRLARQQSNMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISLNKYLDAVNNKFSVGMRFKMRFEGDDSTDTDKRFSGTIVGLEDISPHWENSKWRSLKVQWDEPAAVPRPDRVSPWEMEPYVAPALTSSVQPAVVKAKRPRPPSEHPDLDTQSAASVFWDSGLTQADMTQHSVMAESKRSDTTSVWHHKQIDMNSKSNSNLMSRNQTEGSWLSSPHSSCPSQLFQDTMDDSKSVSAWPAPNPHSSRLNNDHVHDQVDKENKAETATSCRLFGIDLIDHSRNSSAVEKAAAQAVNVHSFTSEGCVSTVSKTEAGQKSDASKTGKEKKQEQQQVSPKESQSKQICSRSRTKVQMQGVAVGRAVDLTMLDGYEHLIVELEELFDIKGQLQDRNKWEIVFTDDEGDMMLVGDDPWPEFCHMVRRIFICSSQDVKKMSTGSKLPISSIEEGTVISSETAET 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02031 690 MobiDBLite consensus disorder prediction 543 579 - -
Aip02g02031 690 PANTHER AUXIN RESPONSE FACTOR 12 679 - -
Aip02g02031 690 MobiDBLite consensus disorder prediction 429 454 - -
Aip02g02031 690 Gene3D - 575 667 - -
Aip02g02031 690 SMART B3_2 125 227 IPR003340 GO:0003677
Aip02g02031 690 Pfam Auxin response factor 251 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip02g02031 690 Gene3D - 122 226 IPR015300 -
Aip02g02031 690 CDD B3_DNA 123 225 IPR003340 GO:0003677
Aip02g02031 690 MobiDBLite consensus disorder prediction 550 565 - -
Aip02g02031 690 ProSiteProfiles PB1 domain profile. 579 660 IPR000270 GO:0005515
Aip02g02031 690 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Aip02g02031 690 Gene3D - 286 359 - -
Aip02g02031 690 Pfam AUX/IAA family 439 663 IPR033389 -
Aip02g02031 690 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Aip02g02031 690 SUPERFAMILY DNA-binding pseudobarrel domain 114 254 IPR015300 -
Aip02g02031 690 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip02g02031 690 SUPERFAMILY CAD & PB1 domains 579 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02031 Aip-Chr2 87714665 87719916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02031 10 672 B3 DNA Binding Superfamily AT4G23980 59.403 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip02g02031 AUX_IAA 7.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02031 K14486 - gmx:100779003 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01979 04 91244970 91254470 Aip02g02031 02 87714665 87719916 PCT