Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02006 ATGAACACGCCTCTTAACCGGGATGCGAAGTCATGCTTAGAAAGGTGGAAGAATTACCTTAAGCCAGGCATTAAGAAAGGATCTCTCACCGAAGAAGAGCAGCGTCTTGTGATCCGCCTCCAAGCGAAATACGGAAACAAATGGAAGAAAATTGCGGCCGAAGTCCCCGGTCGGACTGCTAAGAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAACAGCTAAGACAGAAAAAGGAGATTAACAGAATTACCGAACCAATTAACGATAGCAAGTACGAGCACATACTAGAGAGTTTCGCCGAGAAGCTAGTTAAGGACAGCCCTTCGCCTTCGTTTGTTATGGCTTCTTCCAACGGGCCATTTCTTCATGCGGATGCACCGGCCCCTGCATCCCCTGTGCTTCCTTCTTGGCTTTCCAATTCTCATAGTCATAGTGCTACAACCGGCCCTCCAAATTCACCATCCGTGACACTAAGTCTTTCCTCACCAACCGTGGCAACACCACCATTTCCGTGGATGCAACCGGAGAGAGCACCGGATAATGCTTCGTTTGCTTTAGGCAATGTGCCTCTTTGTGGACCTTTTCCGGCTTCTGGTGATAACATGCTGATATCTGAGTTGGTGGAGTGCTGCAAAGAGCTGGAAGAAACACATCATGCTTTGGCCGCGCATAAGAAAGAGGCAGCCTGGAGGTTAAGAAGGGTGGAGTTGCAGTTGGAGTCGGAGAAGGCAAGCCGAAGGAGGGAGAAGATGGAAGAAATCGAAGCGAAGATTAAAGCCCTCGAGGAAGAGCAGAAGGCTGCTTTGAGTAGAATTGAAGCTGAGTACAGGGAACAGTTAGCCGGATTAAGGAGGGATGCCGAGACCAAGGAGCAGAAGTTGGCCGAACAATGGGCGGCGAAGCACTTGCGGCTTACTCGGTTTCTGGAACAAGCAGGATGCAAACTGGGGCTCCCTGAGCAACATGGAAGATGA 978 0.499 MNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLRQKKEINRITEPINDSKYEHILESFAEKLVKDSPSPSFVMASSNGPFLHADAPAPASPVLPSWLSNSHSHSATTGPPNSPSVTLSLSSPTVATPPFPWMQPERAPDNASFALGNVPLCGPFPASGDNMLISELVECCKELEETHHALAAHKKEAAWRLRRVELQLESEKASRRREKMEEIEAKIKALEEEQKAALSRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTRFLEQAGCKLGLPEQHGR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02006 325 Pfam Myb-like DNA-binding domain 26 61 IPR001005 -
Aip02g02006 325 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Aip02g02006 325 Gene3D - 29 92 - -
Aip02g02006 325 SMART sant 25 73 IPR001005 -
Aip02g02006 325 MobiDBLite consensus disorder prediction 142 162 - -
Aip02g02006 325 CDD SANT 30 71 IPR001005 -
Aip02g02006 325 Coils Coil 233 294 - -
Aip02g02006 325 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 325 - -
Aip02g02006 325 SUPERFAMILY Homeodomain-like 6 76 IPR009057 -
Aip02g02006 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Aip02g02006 325 PANTHER TRANSCRIPTION FACTOR AS1 1 325 IPR031055 GO:0005634|GO:0006351|GO:0010338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02006 Aip-Chr2 86793167 86794144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02006 1 320 MYB Transcription Factor Family AT2G37630 64.307 2.60e-136 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip02g02006 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02006 K09422 - gmx:100101908 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02006 02 86793167 86794144 Aip02g02006 02 86793167 86794144 ECH