Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02005 ATGAATCAGTTATCTTCCATGGGTATCAAGTTTGATGAAGAGGTTCAAGGATTGTTACTTCTTGGCTCCTTACCAGACTCATGGGAAATTCTCAGAATGTCATTGTCTAATTCTGCTCCTGATGGTGTAATCTCTATGGATCTTGTCAAGAGCAGTGTTTTGAATGAAGAGATGAGAAGAAAGTCACAAGGTACATCGACTACACATTCAGATGTTCTTGTTTCTGAGTCTAGGGGAAGTGCAGCTGAGTTTTTCCCTGATAGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACTAAGGAGGAGGATGACAAAATAGTTGAAATGGTGTCAAAATATGGGCCATCAAAATGGTCTTTGATAGCAAAGTCCTTGCCTGGTCGAATAGGAAAACAGTGTCGAGAACGGTGGCACAATCATCTTAATCCCGACATAAAGAAGGATGCTTGGTCTTCGGAAGAGGAGTTGGCCCTCATGAATGCTCATCGCATATATGGAAACAAATGGGCTGAAATTGCTAAGGTTCTTCCTGGAAGGACTGATAATGCTATAAAGAACCACTGGAATAGTTCGCTAAAAAAGAAGATGGATTTCTATTTAGCCACAGGAAGACTTCCACCAACTTTGAAGAACAGTCCACAAGTTGTTGTCAAAGACACTGTTAGACATTCTAAACCTACATTATTTGTTTGTTCAAATAAAGAATCAGATACTGCAGTTGAATCTTCATCGGAAACTACAGAAATTACTCAACTATATAGCAGTGACAAGAAGGACAAGAATCGACTAGAGTGCTTGGTAACAGTTGGAGATTCCTCTGGTGCTCCTCTTGTAAATGAATCTGTTGATACTGAATGTAAAGCTGGATCATCCAACATAAATCTCAGCTGCAACGACTCAGAACTGGTGTCAAGAGATAATTTCCAAGTACATAGTATAAAGAACTCTGAGAATCCTGGACTGGTTGGCAAACCGAATGAGAGTTGCAGAGACAATGCTAAAATGAGCAATAACAGGTTCTGCAGAACATGTTTTTCACACGAAACTCCGGTCTCTGGTTCTTTATGCTACGAGCCACCACAGTTAGACTTTTCAGTCCCTTTAGATTCTCTTTATTCCAATATCCTTCATGAGCAGAATGACTGCTCTTCTCCGATTGCGTCATCCGTTGGTTTCTTCTCTCCACTTGGTGTAAATGGTAGTGAAAACGTAACCCCCGAATCAATATTGAAAATGGCAGCAAAAACTTTTCCGAGTACTCCTTCAATAATGAGGAAGAGAAGGACTGTTTCCCAAGCACATGTCACTCCTAGTAAAGCTTTGAAAGCAGATATTGATTCACAGACGTCTAAAGTACAAGAGAGATCCAAGGATAACTCTGATTCTATAGTTGGGAGCGACATTATTAATAATAATAAGGATTTCAATGCATCTCCCCCCTATCGACTTAGACCAAAGCGGACCGCAGTTGTCAAGTCGATTGAGAAACAGCTTGAGTTTGCATTTGAAAAGGAGAAGGATGACAGTGGGAATGCTCAGGTTGCGCATGGTGGTCGCGATACGGTGGAAGAGGATGGAAACGAATATGGTTCAAGGACCCAGATCATGATAAGTGAAGGGGACGTCTCTTTTGCCGTAGATGCAGGGAGGTCGATATTGAGAAAGGAAAAACAAGTCATTATGTCGTCAATGGAGATAAATGCTAGAACATCTAAGAGGCTGCGAACAGATGGGAAAGGAAGCAGCAAAATACAGAACCAAAGGGAAGAATATCAAGAGTGTGGCAGTTGTAAGGAAGCACAAGTTGAAGAGGGCCACAATGAGTCAAACTTGAGAGTTGTAGCAATGGCTCTAGATGATGCATGTTCAGATACAAAAGAAGAAAAACATAGTGATGGGGAATCAAATAACTCTGGCATGGATGCAAGCAATGTTATGAAGAATGAGGAAGAACGAAAGAGATGGGAGAAAGACATGGATGCGaacagggaaACCCGCAAAGACGAACTTGAGTCGGCAGAAAGACAGCATGCAGAAGCAGAGGTGGAGACAGAAAAGGCGAGCCATGGCAGAACCAAGATGGCAGCTTCAACTCAGACAAAGGAAGCGCGGAGACAATGTGCAGGGATGATGCTACAGAGATATCAGCGAAAGTGCAGGAATGATGTGACGCAGATGAAGGCAACAGACGGCGCAGAAGCTGGCAGACATAGAGGACCCGGTGACGAGACAGCTACCGTACGGTGTCAGCGAAAAAGAGTGAGAAACTTGAGACATAGTTTCAGAGTGAGAGGGTGCATTGGAGAGGGAGGGGAGAGAGGGGATTAA 2364 0.4255 MNQLSSMGIKFDEEVQGLLLLGSLPDSWEILRMSLSNSAPDGVISMDLVKSSVLNEEMRRKSQGTSTTHSDVLVSESRGSAAEFFPDRSEVQCLHRWQKVLNPELVKGPWTKEEDDKIVEMVSKYGPSKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWSSEEELALMNAHRIYGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKMDFYLATGRLPPTLKNSPQVVVKDTVRHSKPTLFVCSNKESDTAVESSSETTEITQLYSSDKKDKNRLECLVTVGDSSGAPLVNESVDTECKAGSSNINLSCNDSELVSRDNFQVHSIKNSENPGLVGKPNESCRDNAKMSNNRFCRTCFSHETPVSGSLCYEPPQLDFSVPLDSLYSNILHEQNDCSSPIASSVGFFSPLGVNGSENVTPESILKMAAKTFPSTPSIMRKRRTVSQAHVTPSKALKADIDSQTSKVQERSKDNSDSIVGSDIINNNKDFNASPPYRLRPKRTAVVKSIEKQLEFAFEKEKDDSGNAQVAHGGRDTVEEDGNEYGSRTQIMISEGDVSFAVDAGRSILRKEKQVIMSSMEINARTSKRLRTDGKGSSKIQNQREEYQECGSCKEAQVEEGHNESNLRVVAMALDDACSDTKEEKHSDGESNNSGMDASNVMKNEEERKRWEKDMDANRETRKDELESAERQHAEAEVETEKASHGRTKMAASTQTKEARRQCAGMMLQRYQRKCRNDVTQMKATDGAEAGRHRGPGDETATVRCQRKRVRNLRHSFRVRGCIGEGGERGD 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02005 787 Gene3D - 106 158 - -
Aip02g02005 787 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 157 IPR017930 -
Aip02g02005 787 PANTHER MYB-RELATED PROTEIN B-LIKE 81 471 - -
Aip02g02005 787 Coils Coil 668 695 - -
Aip02g02005 787 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 208 IPR017930 -
Aip02g02005 787 MobiDBLite consensus disorder prediction 634 713 - -
Aip02g02005 787 CDD SANT 109 153 IPR001005 -
Aip02g02005 787 MobiDBLite consensus disorder prediction 516 539 - -
Aip02g02005 787 ProSiteProfiles Myb-like domain profile. 102 153 IPR001005 -
Aip02g02005 787 MobiDBLite consensus disorder prediction 448 479 - -
Aip02g02005 787 SUPERFAMILY Homeodomain-like 104 200 IPR009057 -
Aip02g02005 787 SMART sant 106 155 IPR001005 -
Aip02g02005 787 SMART sant 158 206 IPR001005 -
Aip02g02005 787 Pfam gag-polypeptide of LTR copia-type 2 62 - -
Aip02g02005 787 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Aip02g02005 787 Pfam Myb-like DNA-binding domain 110 168 - -
Aip02g02005 787 PANTHER MYB PROTEIN-RELATED 81 471 - -
Aip02g02005 787 Gene3D - 160 225 - -
Aip02g02005 787 MobiDBLite consensus disorder prediction 657 702 - -
Aip02g02005 787 CDD SANT 161 204 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02005 Aip-Chr2 86718289 86735729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02005 58 518 MYB Transcription Factor Family AT5G02320 45.567 1.47e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip02g02005 Retrotran_gag_2 4.3e-09 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02005 K09422 - gmx:778081 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02005 02 86718289 86735729 Aip02g02005 02 86718289 86735729 ECH