Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g02001 ATGGCGAAGGAACTTGAAAACAATGCCCAAGAGGCATTCTTGGATGACGATTTTGCCCTCGCCGCCGATTACTACTCAGAAGCCATCAACTTGGATCCCAACAACCCTCTTCTTTATGCCAACAGAGCCCAAGCCCATATCAAGCTTCAGAACTTCACAGAAGTCGTTTCTGATGCGAACAAAGCCATTCAATTGAGTCCTTCACTGGCTAAGGCCTACTTTTGTAAGGGAACTGCGTGCATTAAGCTGGAAGAGTATCAAACTGCAAAGGTAGCACTTTAA 282 0.4574 MAKELENNAQEAFLDDDFALAADYYSEAINLDPNNPLLYANRAQAHIKLQNFTEVVSDANKAIQLSPSLAKAYFCKGTACIKLEEYQTAKVAL 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g02001 93 Gene3D Tetratricopeptide repeat domain 1 93 IPR011990 GO:0005515
Aip02g02001 93 PANTHER PROTEIN SGT1 HOMOLOG 1 93 IPR044563 GO:0051087
Aip02g02001 93 SMART tpr_5 2 35 IPR019734 GO:0005515
Aip02g02001 93 SMART tpr_5 36 69 IPR019734 GO:0005515
Aip02g02001 93 Pfam Tetratricopeptide repeat 38 68 IPR019734 GO:0005515
Aip02g02001 93 SUPERFAMILY TPR-like 2 92 IPR011990 GO:0005515
Aip02g02001 93 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Aip02g02001 93 PANTHER PROTEIN SGT1 HOMOLOG A 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g02001 Aip-Chr2 86326507 86326788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g02001 1 86 U-box Gene Family AT3G07370 38.372 7.61e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g02001 K12795 - aip:107627523 171.4