Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01975 ATGAAGAGTGAAGTGGAAGTTAATGATGCAGGTTTCGGAACCATGGATGATGCTAACAACAACACTAATAAGAACATAGAAGAAGATCTGAGTGAAGTGAATTACGAGTGGCTTCATGAAGATCCAAACTTGTTCTACGACGATTTTCCTCCTCTCCCTGATTTTCCATGCATCTCATCACCACCATCATCGTCATCATCATCATCATCTTTTTCATCATCAAAGCCAGCAGAGAAACCCATCACTGCATGTTCTTCATCTTCCTCTGCTTCTTCATCATCATCATCGTCATGTGCGGCTCTCAAAAAAGACATGCAGAAACCCAACAACACAAACATTACTGAAACAAAAGTACCTTTGCGTTCCACTGCTTCCATGGAGATCTCACAAACCGCCATGGATAGTAATCCACTGTTCCCAAATAACGTTGTTGGTGGTTGCATGGATATGATGGATATGGAAATGGAGCCTTTTGGGTTCATAGACTTCTTAGAAGAGCAAAACAACGCTGATTTCTTTGACCCCGACTCCATTTTCCATCACAACTTTCTCCAAACTGAAAATGAAAGTGAAATCCCATCATTACAACAAAACCAATTCACACAACAACCACCACCAGCACCAGAGGCAGAGGAAGAAGGTGTTACCAACAACAACAGAGAGGAGGGTGAAATGGTAATTCATCACGAGGATGACGGAAACGATGAAATGAGCAATGTGTTCTTGGAATGGCTAAAGACCAACAAGGACAAAATCTCAGCGAGTGATTTGAGAAGTGTGAAGCTGAAGAAATCAACGATCGAATCCGCGGCGAAGCGATTGGGCGGAGGAAAACAAGGGATGAAGCGTTTGCTAAAGCTTATTCTTGAATGGGTTCAAACCAACCACCTCAAGAACAAGAACCCAATTGAATCTTCCTCAAACCCTAATAATTTCTTCAATAAACCTCAATTACCACCACCACCACCACCATGCATTTATGCCTCTCATAATCCTGCTTTAATGGTGCAGTATCCTCCACAACCTGCTTATGTTACTGATGCTGGTGCTGATTATAGCAATAATAAGAATTCATGGCCTAATTCTCAGTTAAATAGTGTTACTACCCATTACAACCTTCCATTTGGGGACAATCATCTTCTCCCTGCGGTTCTTTATGGAAATCAGTACCCTTATCAGTTGTTTTATGGAAATGGAAATGGTGGTGGTGGTGGTGGTGGTGATCATGGATGGCGAAGATTAGGTCCTTTGGCTACCAAAGAAGCTAGGAAGAAGAGGATGGCGAGGCAGAGAAAGTGTTCATCAAATCAGAGGCAGAACAATCACTGGGGCCAGCCACAGAATCAGAGCCAAATTGCTGATACGGGGTGGAAGTCATCAGAGAAGAACTTGAAATTTCTTCTCCAAAAGGTTTTGAAGCAAAGTGATGTTGGTAGCTTGGGAAGGATAGTCTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCAGAATTGGATGCAAGAGATGGAATTTCTATTGACATGGAAGACATTGGAACTTCTCAAGTTTGGAATATGCGCTATAGATACTGGCCAAACAATAAAAGCAGGATGTATCTGCTTGAGAACACTGGAGATTTCGTGAAAGCCAATGGACTCCAAGAAGGAGACTTTATAGTGATATATTCAGATGTGAAATGTGGCAAATTTATGATAAGAGGCGTGAAAGTGAGGCAAGCAGGAGGGACGAAATCGGAGACCAAGAAAGCAGCAGGAAAATCACAGAAAAACCAACATACAGTTGTTAATGGTCCAAACAACAATGCTACTTCGTCTTCACGTGATCAGCCGAAAATGAAAATTTAA 1842 0.4191 MKSEVEVNDAGFGTMDDANNNTNKNIEEDLSEVNYEWLHEDPNLFYDDFPPLPDFPCISSPPSSSSSSSSFSSSKPAEKPITACSSSSSASSSSSSSCAALKKDMQKPNNTNITETKVPLRSTASMEISQTAMDSNPLFPNNVVGGCMDMMDMEMEPFGFIDFLEEQNNADFFDPDSIFHHNFLQTENESEIPSLQQNQFTQQPPPAPEAEEEGVTNNNREEGEMVIHHEDDGNDEMSNVFLEWLKTNKDKISASDLRSVKLKKSTIESAAKRLGGGKQGMKRLLKLILEWVQTNHLKNKNPIESSSNPNNFFNKPQLPPPPPPCIYASHNPALMVQYPPQPAYVTDAGADYSNNKNSWPNSQLNSVTTHYNLPFGDNHLLPAVLYGNQYPYQLFYGNGNGGGGGGGDHGWRRLGPLATKEARKKRMARQRKCSSNQRQNNHWGQPQNQSQIADTGWKSSEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELDARDGISIDMEDIGTSQVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQAGGTKSETKKAAGKSQKNQHTVVNGPNNNATSSSRDQPKMKI 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01975 613 Pfam B3 DNA binding domain 469 565 IPR003340 GO:0003677
Aip02g01975 613 SUPERFAMILY DNA-binding pseudobarrel domain 467 563 IPR015300 -
Aip02g01975 613 MobiDBLite consensus disorder prediction 56 121 - -
Aip02g01975 613 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 605 - -
Aip02g01975 613 SMART B3_2 468 568 IPR003340 GO:0003677
Aip02g01975 613 MobiDBLite consensus disorder prediction 59 121 - -
Aip02g01975 613 CDD BfiI_C_EcoRII_N_B3 466 567 - -
Aip02g01975 613 MobiDBLite consensus disorder prediction 433 454 - -
Aip02g01975 613 MobiDBLite consensus disorder prediction 586 613 - -
Aip02g01975 613 Gene3D - 442 577 IPR015300 -
Aip02g01975 613 ProSiteProfiles B3 DNA-binding domain profile. 468 570 IPR003340 GO:0003677
Aip02g01975 613 MobiDBLite consensus disorder prediction 190 218 - -
Aip02g01975 613 MobiDBLite consensus disorder prediction 425 454 - -
Aip02g01975 613 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 605 IPR044800 GO:0003700
Aip02g01975 613 MobiDBLite consensus disorder prediction 190 205 - -
Aip02g01975 613 MobiDBLite consensus disorder prediction 1 27 - -
Aip02g01975 613 MobiDBLite consensus disorder prediction 573 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01975 Aip-Chr2 85277612 85281723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01975 456 605 B3 DNA Binding Superfamily AT3G24650 74.359 1.58e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip02g01975 B3 1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01975 - - aip:107625556 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01975 02 85277612 85281723 Aip02g01975 02 85277612 85281723 ECH