Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01882 ATGGCGTTTGCACGACCAGCTAAAATGCCAAAAATTGAGCACAAAGGTCAACTATCAAGCAAGATGGCAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCTGGATATTTGATGATTTTAGCCAATCAATTGGAAGAATTGCTTCCTGGAACTATCCATCGAAAGGAGAGGTTCTATGCTTTAGCTCTTTGTTATTACGGAGCAGGGAAGAACGTGGAAGCGCTGGATCTTCTTAGAAAACTGCTGAGTAATAGAGAGGACCCAAGACATGTTCCAAGTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACTTCAGTGTTACAAAAGACCCTGGGGTAAGCTTTGCTCGGATGGCACTTGAGAACTTGGATGGAAGATGTAATCAGTTAGAAAATATGGCCAATTTCTTACTTGGTGTTTCACTTTCTGCATACTCGAAATTGGCCATTTCTGATGCTGAGAGGGTTAAGAGACAATCTGAGGCACTTCATACCCTTGAAACTGCCTGCAAATTGAGCAGAATGGAAGACCCTGTTGTATTATACCATCTGAGTTTAGAATACGCTGAGCAACGGAAGTTGGATGCTGCACTTCATTATGCTAAGTGCATTGTAAAACTTGAAGTTGGCTCTAATGTTAAAGGTTGGTTACTGTTATCTAGGGTATTATCCGCACAAAAGCGGTTCTTAGATGCTGAATCTATTATCAATGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTACGAACAAAGGCGAAACTTCAGATCGCTCAGGGCCAGTTAAAGAGTGCCATTGAGACATACACTCAGCTTCTTGCTGTTCTTCAAGTTCATAGTAAAAGTTTTGGTTCTCGGAATAAGCTATTTAAGGACAAAAGAGATCAGATTAGGAATTTGGAAGTTGAAGTATGGCATGATCTTGCTTATGTATACATCAGCCTTTCACAGTGGCGTGACGCAGAGGCCTGCCTTTCAAAATCTCGGGCCATCAAACTATACTCTTCTACTAGATGTCATGCAATAGGGTAA 1083 0.409 MAFARPAKMPKIEHKGQLSSKMARKVTLNRIEWDPSILDHLSFALSVSGYLMILANQLEELLPGTIHRKERFYALALCYYGAGKNVEALDLLRKLLSNREDPRHVPSLLMASKICCENFSVTKDPGVSFARMALENLDGRCNQLENMANFLLGVSLSAYSKLAISDAERVKRQSEALHTLETACKLSRMEDPVVLYHLSLEYAEQRKLDAALHYAKCIVKLEVGSNVKGWLLLSRVLSAQKRFLDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLKSAIETYTQLLAVLQVHSKSFGSRNKLFKDKRDQIRNLEVEVWHDLAYVYISLSQWRDAEACLSKSRAIKLYSSTRCHAIG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01882 360 Gene3D Tetratricopeptide repeat domain 258 354 IPR011990 GO:0005515
Aip02g01882 360 SMART tpr_5 69 102 IPR019734 GO:0005515
Aip02g01882 360 SMART tpr_5 192 225 IPR019734 GO:0005515
Aip02g01882 360 SMART tpr_5 319 352 IPR019734 GO:0005515
Aip02g01882 360 SMART tpr_5 263 296 IPR019734 GO:0005515
Aip02g01882 360 SMART tpr_5 227 260 IPR019734 GO:0005515
Aip02g01882 360 PANTHER PROTEIN NPG1 21 360 IPR043376 -
Aip02g01882 360 Gene3D Tetratricopeptide repeat domain 54 257 IPR011990 GO:0005515
Aip02g01882 360 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 21 360 - -
Aip02g01882 360 SUPERFAMILY TPR-like 70 348 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01882 Aip-Chr2 82079268 82080441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01882 24 360 Calmodulin-binding Proteins AT4G28600 54.386 5.57e-113 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01882 K21843 - gmx:100800762 528.094