Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01880 ATGAGGATGGTTAAGGAAATTTTGGGACAAAGTGTAGTGGTTGAAGCATTTTGTTTTGATGCTTCTAGAAGATGTCACACTCATCAAAATAATAATAAGAAACACAAAATTTCAATGTTTCCCAGTTTCTCTTGCTCATCAATTCTGTTGCCCATTGTGAAGAGGAGAACCACCTTTGATGATTTGATTAGTAGTAATAAGAGTCTCCATGATGGTGGTGGCGTAACGTTGACGATAAGTGCAAGTGTTACTATAAAGAATAGTAAGGAGTTCATGGCAATGATGCTTCATTACTTTGATAGTTTCAGCCATAATACAACTGGTGGGGATAGAGGAATCATCATGCAGCTAGTTAGCACTCAAATTGATCCCACAACAATGGAGGGAAAGCTGAGCAAGAGAGCCGTACTGGATTGGACAAGAGAATTATTATTTAATGGAGGTGGGGATAGTGAGAGGTCCACTCACAAAGTTGAATTTGAGATTGACTCTAATTTTGGATTTCCGGGAGCCATTACAGTCACAAACAAATATGACAAAGAGATCTTCTTGGAAACCATTTCCATTGAAGGAGGCTTTGTGGAATTTTCTTGCAATTCTTGGGTTCAACCTGAAAAGGTTCACCCAGACAAGAGAATTTTCTTCACCAACAAGGCATGCTTACCATGTGACACAGCAGAGGGTGTGAAGGAACTACGAAAAGAAGAGCTGAGACAAAAGAGGGGAGATGGAAATGGAATGAGGAAGGTGATGAGTGATAGGGTTTATGACTATGATGTCTACAATGACTTGGGAAATCTAGACAAGGGCATTCAACATGTTAGGCCAATTTTGGGAACCAAACAACATCCTAATCCTAGGCGTTGTCGAACTGGCCGTCCACCTGTCATAACTAACGAGAAATATGAGTCGTGTGTGAATGCATTCATGGAAACATATGTGCCAAGAGATGAAGTGTTTGAAGGAGTTAGAAAGGAGGCACTTGATGTGGAGAGAGTGAAAGGTGTAACAAGAAATTTGATTCCCTTCATAAGAACTTATATAACTAAGTGTGGAGTCTTTAAGGAGCTATTAGAGATTAAGAACATATACAAAAGAAGGCATCAAGTGGATGCAATGAATCATACTAATGAGGAGAATGGGACACTTTCTATTGATGTTAACAAGTTATTCCAAGATTCCTTCGAAGAGTACTTCAAATTTAGCACTCCACACATTATAAGTGGGAATGGTGGTTGCTGCATAACAGATGAAGAACTTGGGCGTCAGGCCTTGGCTGGCGTCAACCCTTTAAGCATAAAAAGGCTTCAGACTTTTCCACCGGTGAGTGATTTGGACCCCTCCATGTATGGTCCACAAGAGTCCGCTCTAAAAGCAGAGCACATAATTAGCCACTTGGACGGCATGTCCGTACAACAGGCTATAGTGGAAAAGAAGCTATTCATTTTGGATTACCATGATGCTTATATGCCCTTTCTAAAAGGGATCAATGCTCAAGAGGACCGAAAAGCATATGCAACTCGTACCATATTGTACTTGACTAGAATGGGAACTTTGAAACCTATTGCCATAGAGCTGAGTCTTCCTGAGGGGGAGCACCAACAACAACAATCCAAACAGGTTCTAACACCTCCATTGGATGCCACTTCTTATTGGTTGTGGCAACTTGCCAAAGCACATGTTTGCTCCAATGATGCTGGAGTTCACCAACTTGTTCATCACTGGTTGAGGACCCACGCGTGCATGGAGCCATTCATCATAGCAGCACATCGCCAGATGAGTGTCACGCACCCTATCTTCAAGCTCCTAAAGCCTCATATGAAATACACACTGCAGATAAATGCATTGGCTCGCAAGGCTCTTATCAATGGTGGAGGCATCATTGAATCTGACTTCTCTACCGGCAGATACAGCACTGAGATCGTCTCGGCCGCTTACAAAGATTGGTGGCGTTTTGACATGGAAGCCCTCCCAGCTGACCTTATTAGAAGGGGACTAGCAGAACCAGACAGAGCACAACCTCTTGGGATAAAACTTACAATTGAAGATTACCCTTATGCAAATGATGGGCTTCTTATTTGGTTTGCTTTGGAGAGGATGGTTAGAACTTATGTGAACTACTACTACCATAATGGCCTAATGGTACGGTCGGACACTGAACTCCAAGGGTGGTACAATGAGGTCATCAACGTAGGCCATGGTGATCATGCACATGCTACTTGGTGGCCAACACTTGCCACTCCCAGAGATCTTATCTCAGTCCTCACCACACTCATTTGGATTGCTTCAGTTCAGCATTCAGCAGTGAATTTTGGGCAGTACCCTCTTGGCGGGTACGTCCCGATGCGCCCGCCGCTGGTGAAGAAGCTGCTACCCAAGGAAGGAGATCCAGAGTACAAGGAGTTCTTGGAGGATCCCGAAGGTTTCTTGTGTTCTTCCCTGCCGAATATGTTTCAAACCACCAAGTTTCTTGCAGTGCTTAACATACTCTCTCAGCATCCGGAGGATGAAGAATACATAGGGCAGAGAAGGGACTTGTCAGATTGGATTGGTGACCCTAAAATCATAGAGGCATTCTATGATTTCTCCATAGAGCTAAAGAGAATAGAGAAGGAGATTGAGAAGAGGAATAAAGACCAGATTCTTAGAAACAGATGCGGTGCTGGGATTCCACCATATGAATTGCTTATAGCTAGCTCTGGTCCTGGAGTTACTTGTAGAGGGGTGCCTAATAGCATAAATTCAGGGGCATTTCAGAGAAGAGAAGTAGTTAGGGTTTTCAGACAACTGCAATCCCTGCCATTCTCATACCCTTCCTCTGCTGCAAATTTCCGCCACCTACTTCCGCCGACGCGCCACGCCTCCGCCGCCGCCGCACCCTGCCTCCGCCTCGCCCCGCTTCCGCCTCGCCCTGCTTCCGCCGCCGCACCACGCCTCCCACGCTCAATAAGACAAGAGACGGTTCAATACCCGGTGGAACATGCTGAGAAGTTTGAGAAATTTGGCATGTCGCCTTCCAACCGCGCCACGCCTCCCACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCATCTGGTTCATCAGATATCTGAGGTTGTCAATACTCAATTCCATGAAAGATCTGATAGATATCTGTCGGGAGCACAAAATTGGAGCAATTGATAAAGGTGATGAATCAGGGCCAATCATACTTCATCTGGATTCTTTGAGTCTTCACTCTAGCAGATCACTATTTGATAACATCAAAAGATATGCAAGGACAAGAGGCTTTAGTGCTCGGAAGAACAGGACTAGGAAGAGTCGTGCGGGCGCACTTAAGTTGAAGAATTTTGTATGTCATCGTAAAGGATTTAGACCGCCAAATAATTACGGCATCGGAAACCTTAAGAGAAAACCTACACCCGAGACAAGGTGTGGCTGCAGTGCAATTATGGAAATTCGTGTAGATGCACCTAGCGGTCGTTGGTTTATTTCTTATTTTTCTGATGAACACAATCATCCGCTTCTGGATCCTCGGTTGACTGGATTGCTCCCTGGGCATAGATTCATGTCCGAGGCTGATATTGGCCACATGGTTAACATGAAAAAGGGTGGGATTAGTGTTGGGCAGATATATCGGGCATTAGCAAATCAGGCAGGTGGCTACGAGTATCTCTCTTTCACGCAAAGGGACATGTACAATAAAATAGCAAAGCAGAGGCGCCAATTACCTAGTGATGCATATGCAGCTTTGAAGTATCTAGAAGATCAAGCAACAAATGACCCTTCTCTCTATTTTAATCATCACATGGATGCCGATGGTACTTTGCGCAATTTATTCTGGTGCGATGGTCTCAGCAGGGCCGACTACTCATTATTTGGCTATGTGCTGGCGTTTGATGCTACCTATAAGAGGAATAAATATATGTGTCCACTGGTGGTATTTTCTGGTGTCAATCATCACAATCAAACAATTATCTTTGCTGCTGCTTTAATTTGCGATGAGGAAAAAGACACATACAGGTGGTTGCTACAACAACTGAAGGTAGCAATGAATGGGAAAGCACCTGTTTCGGTGATCACGGATGGTGATCTATCAATGAAGTTCGCCATTGAGAAAGAGTTTCCTAATGCACATCATAGATTATGTGCATGGCATCAGTCAGTACGGTTGTTTGATGGATTGGTTTAG 4179 0.442 MRMVKEILGQSVVVEAFCFDASRRCHTHQNNNKKHKISMFPSFSCSSILLPIVKRRTTFDDLISSNKSLHDGGGVTLTISASVTIKNSKEFMAMMLHYFDSFSHNTTGGDRGIIMQLVSTQIDPTTMEGKLSKRAVLDWTRELLFNGGGDSERSTHKVEFEIDSNFGFPGAITVTNKYDKEIFLETISIEGGFVEFSCNSWVQPEKVHPDKRIFFTNKACLPCDTAEGVKELRKEELRQKRGDGNGMRKVMSDRVYDYDVYNDLGNLDKGIQHVRPILGTKQHPNPRRCRTGRPPVITNEKYESCVNAFMETYVPRDEVFEGVRKEALDVERVKGVTRNLIPFIRTYITKCGVFKELLEIKNIYKRRHQVDAMNHTNEENGTLSIDVNKLFQDSFEEYFKFSTPHIISGNGGCCITDEELGRQALAGVNPLSIKRLQTFPPVSDLDPSMYGPQESALKAEHIISHLDGMSVQQAIVEKKLFILDYHDAYMPFLKGINAQEDRKAYATRTILYLTRMGTLKPIAIELSLPEGEHQQQQSKQVLTPPLDATSYWLWQLAKAHVCSNDAGVHQLVHHWLRTHACMEPFIIAAHRQMSVTHPIFKLLKPHMKYTLQINALARKALINGGGIIESDFSTGRYSTEIVSAAYKDWWRFDMEALPADLIRRGLAEPDRAQPLGIKLTIEDYPYANDGLLIWFALERMVRTYVNYYYHNGLMVRSDTELQGWYNEVINVGHGDHAHATWWPTLATPRDLISVLTTLIWIASVQHSAVNFGQYPLGGYVPMRPPLVKKLLPKEGDPEYKEFLEDPEGFLCSSLPNMFQTTKFLAVLNILSQHPEDEEYIGQRRDLSDWIGDPKIIEAFYDFSIELKRIEKEIEKRNKDQILRNRCGAGIPPYELLIASSGPGVTCRGVPNSINSGAFQRREVVRVFRQLQSLPFSYPSSAANFRHLLPPTRHASAAAAPCLRLAPLPPRPASAAAPRLPRSIRQETVQYPVEHAEKFEKFGMSPSNRATPPTLNKTRGFCGPKSLIWFIRYLRLSILNSMKDLIDICREHKIGAIDKGDESGPIILHLDSLSLHSSRSLFDNIKRYARTRGFSARKNRTRKSRAGALKLKNFVCHRKGFRPPNNYGIGNLKRKPTPETRCGCSAIMEIRVDAPSGRWFISYFSDEHNHPLLDPRLTGLLPGHRFMSEADIGHMVNMKKGGISVGQIYRALANQAGGYEYLSFTQRDMYNKIAKQRRQLPSDAYAALKYLEDQATNDPSLYFNHHMDADGTLRNLFWCDGLSRADYSLFGYVLAFDATYKRNKYMCPLVVFSGVNHHNQTIIFAAALICDEEKDTYRWLLQQLKVAMNGKAPVSVITDGDLSMKFAIEKEFPNAHHRLCAWHQSVRLFDGLV 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01880 1392 PRINTS Plant lipoxygenase signature 186 204 IPR001246 GO:0016491
Aip02g01880 1392 PRINTS Plant lipoxygenase signature 438 457 IPR001246 GO:0016491
Aip02g01880 1392 PRINTS Plant lipoxygenase signature 505 529 IPR001246 GO:0016491
Aip02g01880 1392 PRINTS Plant lipoxygenase signature 284 303 IPR001246 GO:0016491
Aip02g01880 1392 PRINTS Plant lipoxygenase signature 252 268 IPR001246 GO:0016491
Aip02g01880 1392 PRINTS Plant lipoxygenase signature 827 841 IPR001246 GO:0016491
Aip02g01880 1392 PRINTS Plant lipoxygenase signature 212 233 IPR001246 GO:0016491
Aip02g01880 1392 PRINTS Lipoxygenase signature 551 568 IPR013819 GO:0016702|GO:0046872
Aip02g01880 1392 PRINTS Lipoxygenase signature 569 586 IPR013819 GO:0016702|GO:0046872
Aip02g01880 1392 PRINTS Lipoxygenase signature 589 609 IPR013819 GO:0016702|GO:0046872
Aip02g01880 1392 PANTHER LIPOXYGENASE 68 914 - -
Aip02g01880 1392 Gene3D - 566 913 - -
Aip02g01880 1392 SMART LH2_4 101 217 IPR001024 GO:0005515
Aip02g01880 1392 Pfam FAR1 DNA-binding domain 1085 1172 IPR004330 -
Aip02g01880 1392 ProSiteProfiles PLAT domain profile. 79 216 IPR001024 GO:0005515
Aip02g01880 1392 Pfam MULE transposase domain 1292 1382 IPR018289 -
Aip02g01880 1392 Gene3D PLAT/LH2 domain 76 238 - -
Aip02g01880 1392 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 219 915 IPR013819 GO:0016702|GO:0046872
Aip02g01880 1392 Pfam PLAT/LH2 domain 126 215 IPR001024 GO:0005515
Aip02g01880 1392 Gene3D - 240 341 - -
Aip02g01880 1392 ProSitePatterns Lipoxygenases iron-binding region signature 1. 569 583 IPR020833 GO:0016702|GO:0046872
Aip02g01880 1392 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 83 219 IPR036392 GO:0005515
Aip02g01880 1392 Gene3D - 346 430 IPR027433 -
Aip02g01880 1392 PANTHER LIPOXYGENASE 68 914 IPR000907 GO:0016702|GO:0046872
Aip02g01880 1392 Pfam Lipoxygenase 229 897 IPR013819 GO:0016702|GO:0046872
Aip02g01880 1392 ProSitePatterns Lipoxygenases iron-binding region signature 2. 596 606 IPR020834 GO:0016702|GO:0046872
Aip02g01880 1392 Gene3D - 432 565 - -
Aip02g01880 1392 SUPERFAMILY Lipoxigenase 221 914 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01880 Aip-Chr2 82054937 82068819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01880 1 914 Acyl Lipid Metabolism Gene Families AT1G17420 52.047 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip02g01880 Lipoxygenase 4.6e-283 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01880 K00454 - gmx:100785480 1275.77