Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01860 ATGGATGGTCGCCGGAGGATAACACTTTATGATCAAATGACAGCTGGCAAAACCACCTCCCTAGCAGATTTGATCCTTCACGACAGTGTCACCGCCGTCTCTGCCGTCGCCGCAGACACCACCGCCGCCGCTGCCGATTCTGAAAGCTGCGAGTTGAGCCAAAGCCGAACCCTCGTAGATATCCTCCGCGAAGATGAACACAACAACATCACCACAGCGGACCGCAAATCTAGAAAATCCTTCAGTTTCATGGACAAGCTTAGATTCAAGCTCGCTCTCAATTCAAGATCAAATTACAGTAATGAAAACAATTCCACTAACATCGACGACAACAACAACAACAACAGCAGCAGCAACAATCATATTGATACCAACCTATCCGAGTTGCAAGCGCGCATCGATCCGGACGAGTTGACTCAGCAAGACGCGACGACTCACCGACAGCAAAACGACGCCATTGCTACTGCCGCCGCCGCAGACACTGAAATCCCGGCGGAAGTCGCGGTGGTGGGACCGGTTGGCGTGTCGCTAATGGATTTGTTGGAGGAAACGGACATGGAAACGGGATTCGAAGTTCCGAGTTACAGAATGAGCAATGCTGATTTTGAGGATGTGATTGAATGTGTAGAAGAAAAGTGCGAAGAAGAAGGGGCGAGTATCGTGGAACGTAACTGCTGCGTGTGCATGGTGAGGCATAGAGGTGCGGCTTTTATACCCTGTGGGCACACGTTCTGCAGGTTGTGCTCCAGGGAGTGCCTCCAGAAGCTTCCTTCGTCCAACAACAAGTTCATCTATAACTACAACAACCACACCTTCAACTTCCTCGTCGACAATGGCTTCACTTACTGTGTTGTTGCGGATGAATCTGCTGGAAGGTAG 879 0.5051 MDGRRRITLYDQMTAGKTTSLADLILHDSVTAVSAVAADTTAAAADSESCELSQSRTLVDILREDEHNNITTADRKSRKSFSFMDKLRFKLALNSRSNYSNENNSTNIDDNNNNNSSSNNHIDTNLSELQARIDPDELTQQDATTHRQQNDAIATAAAADTEIPAEVAVVGPVGVSLMDLLEETDMETGFEVPSYRMSNADFEDVIECVEEKCEEEGASIVERNCCVCMVRHRGAAFIPCGHTFCRLCSRECLQKLPSSNNKFIYNYNNHTFNFLVDNGFTYCVVADESAGR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01860 292 SUPERFAMILY SNARE-like 242 291 IPR011012 -
Aip02g01860 292 PANTHER OS01G0917900 PROTEIN 4 143 - -
Aip02g01860 292 CDD RING-HC 225 259 - -
Aip02g01860 292 Gene3D Longin domain 224 292 - -
Aip02g01860 292 ProSiteProfiles Longin domain profile. 257 292 IPR010908 -
Aip02g01860 292 PANTHER OS01G0917900 PROTEIN 96 252 - -
Aip02g01860 292 PANTHER OS01G0917900 PROTEIN 96 252 - -
Aip02g01860 292 CDD Longin 249 292 IPR010908 -
Aip02g01860 292 MobiDBLite consensus disorder prediction 98 122 - -
Aip02g01860 292 Pfam Regulated-SNARE-like domain 250 292 IPR010908 -
Aip02g01860 292 PANTHER OS01G0917900 PROTEIN 4 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01860 Aip-Chr2 81059986 81062348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01860 1 251 C3H Transcription Factor Family AT3G25030 32.593 1.38e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01860 - - gmx:100802736 147.517