Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01838 atgggattcgacccttactcacgtaagCCACGCACCCTCCTCCCCTCTCTCGTCGTGCAAAACCCAGTCGCCGGTCACCAGCTTCGAAGCCCACTATCCGTTGTCGTCTTGCTCCAACCCGTGAAGCTGGGCATCAGCTTCGCTTTGCCCACCATCCGTCATTGGCGTCCGTTGGGTCTTCCTGGAGCTTGTCTCGGAGCCTCAAACCCGTCGCCATTCGTGTCATCGTTGTGGAAGCCTCAAAGCTCTCCCCAAATCTGCAAATTGCCAGCTTCACGGGTCTGGTGTACAAAGCCCTCAAAGCTCTTCGTATCAGCACTCACTCACTCCATTGAGTATTCCAAATGTTTGGTGAAAAAGCTTTTGAGAAATATGGGAAAAAATAAAACTAAGGAGCTTGCTATCCTTTACGATGCAGAAGTTGGTCTTGTTATATTCTCCAGCACTACAAAACTTTATGAATATGCAAACACAAGGATTATTTTTTTGGACTGGTAA 498 0.4578 MGFDPYSRKPRTLLPSLVVQNPVAGHQLRSPLSVVVLLQPVKLGISFALPTIRHWRPLGLPGACLGASNPSPFVSSLWKPQSSPQICKLPASRVWCTKPSKLFVSALTHSIEYSKCLVKKLLRNMGKNKTKELAILYDAEVGLVIFSSTTKLYEYANTRIIFLDW 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01838 165 SUPERFAMILY SRF-like 128 159 IPR036879 GO:0003677|GO:0046983
Aip02g01838 165 Gene3D - 110 161 IPR036879 GO:0003677|GO:0046983
Aip02g01838 165 ProSiteProfiles MADS-box domain profile. 123 159 IPR002100 GO:0003677|GO:0046983
Aip02g01838 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 128 155 IPR002100 GO:0003677|GO:0046983
Aip02g01838 165 PRINTS MADS domain signature 121 136 IPR002100 GO:0003677|GO:0046983
Aip02g01838 165 PRINTS MADS domain signature 136 157 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01838 Aip-Chr2 80304928 80312266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01838 129 158 MADS-box Gene Family AT4G37940 73.333 6.27e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip02g01838 SRF-TF 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01838 K09264 - vvi:100244955 52.373