Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01815 ATGGATTCAAATTCGCTTCAAGGCTATCAACTTGAACAACAACAAAGCAGTAGTTCTGGTTTGCTTCGTTATCGCTCTGCACCGAGTTCGCTTCTCGCGAATCTCACTCCAACTTTCACTGAATCCCAAGCCTTGCTCTCGAGATTAGCCAATAGTAATAGCAGTAGCAGCAAAAACAATATTTCCAAAAACGATACCGTTTCACATAGCTTCCAAGAATTCCCAGATACAAACACAAACACAAACACAAAAACAAACAATAAGGGTTGTGATTCGAAGGGTCTGAGGCGGATGAATTCTGGAGGGCGCGGATATGGTGGTGGTGGTGGATTGCCACCTCACTACCCAAGGAACACTTCTTCTTCTTCTTCTTCTTCTTGTTCATCTTCAATGGATGGGTCTTTAGGGTTGGTTATGGGTTCAATGGGAATGGACCAAAAAGGGTTTGGCGTTTCTTCTTCTTTAAATCTTCTCAGGCAGAATAGTTCCCCTGCTGACCTTTTCTCCAACGTTTCATTTCAAAATGGATTTGCTACCATGAAAGGTGTCGGGAACTATGGTCATGTTAACAGCACCAGCGAAGAACTTAGTCCATCGATGAACAGATTGAAGAATCAGATTAGCTTCTCATCAAGAACTGCTTCTTCCTTGGGAATGTTGTCGCAGATCTCCGAAATAGGGAACGAGGAAATTGGGGCAAATAGCCCTGAAGATGGGAGGCAGGGTGGTAGCAATGGTGATGCCTTGCATTACAGCCCCGGATTCTGCTATGGTTCTTGGAGTGATGCACCACAACACTCTGAAAACCTCACTGGCTTGAAAAGAGGGCGAAGTAGCAATGGAAAGTTGTTTCCTGATGTTCAGAATGGAGAGCTAGGAAATCAAGTTCATATGCTATCACATCACTTGAGTTTGCCGAAAACTTCATCAGAGATGATTGGTATGGAGAATCTGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCGAAGCGAGGCTGCGCTACTCATCCCCGAAGCATAGCTGAAAGGGTACGAAGAACACGGATCAGCGAACGAATGAGGAAATTGCAAGAGCTGGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCGGTTGACTACATTAAAGATCTTCAGAAACAATTCAAGAATCTAAGTGAAAAGAGGGCAAACTGCAAATGTATAAGCATGCGGAGAGCAGATACAAATCAAATTGTTTAA 1242 0.4388 MDSNSLQGYQLEQQQSSSSGLLRYRSAPSSLLANLTPTFTESQALLSRLANSNSSSSKNNISKNDTVSHSFQEFPDTNTNTNTKTNNKGCDSKGLRRMNSGGRGYGGGGGLPPHYPRNTSSSSSSSCSSSMDGSLGLVMGSMGMDQKGFGVSSSLNLLRQNSSPADLFSNVSFQNGFATMKGVGNYGHVNSTSEELSPSMNRLKNQISFSSRTASSLGMLSQISEIGNEEIGANSPEDGRQGGSNGDALHYSPGFCYGSWSDAPQHSENLTGLKRGRSSNGKLFPDVQNGELGNQVHMLSHHLSLPKTSSEMIGMENLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQFKNLSEKRANCKCISMRRADTNQIV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01815 413 Pfam Helix-loop-helix DNA-binding domain 340 386 IPR011598 GO:0046983
Aip02g01815 413 MobiDBLite consensus disorder prediction 268 288 - -
Aip02g01815 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 385 IPR011598 GO:0046983
Aip02g01815 413 Gene3D - 336 406 IPR036638 GO:0046983
Aip02g01815 413 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 405 - -
Aip02g01815 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 399 IPR036638 GO:0046983
Aip02g01815 413 PANTHER TRANSCRIPTION FACTOR BHLH130 13 405 - -
Aip02g01815 413 SMART finulus 341 391 IPR011598 GO:0046983
Aip02g01815 413 MobiDBLite consensus disorder prediction 1 21 - -
Aip02g01815 413 MobiDBLite consensus disorder prediction 51 130 - -
Aip02g01815 413 MobiDBLite consensus disorder prediction 51 93 - -
Aip02g01815 413 MobiDBLite consensus disorder prediction 115 130 - -
Aip02g01815 413 Coils Coil 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01815 Aip-Chr2 79335277 79338427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01815 1 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.792 1.43e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g01815 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01815 - - aip:107625483 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01815 02 79335277 79338427 Aip02g01815 02 79335277 79338427 ECH
Aip02g01815 02 79335277 79338427 Aip08g00350 08 2631299 2634233 ECH
Aip02g01815 02 79335277 79338427 Aip03g00601 03 5874642 5885310 ECH
Aip06g00343 06 3987675 3990453 Aip02g01815 02 79335277 79338427 PCT