Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01808 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAGAACACCGAAGATGAGATCCTGAAAGCAGCTGTTATGAAATATGGCAAGAACCAATGGGCTCGAATCTCTTCCCTTTTGGTTCGTAAATCCGCTAAGCAATGCAAGGCTCGCTGGTACGAATGGCTCGATCCTTCCATCAAGAAGACTGAGTGGACTAGAGAAGAGGATGAGAAGCTGCTTCATCTTGCTAAGCTTATGCCCACCCAGTGGAGAACGATTGCTCCTATTGTAGGACGTACTCCTTCTCAGTGTCTTGAGCGCTACGAGAAGCTCCTTGACGCAGCCTGTGTAAAGGATGAGAACTATGAACCTGGCGATGATCCTCGGAAGTTGCGTCCTGGGGAGATTGATCCAAATCCAGAGTCAAAACCTGCACGCCCAGATCCAGTTGATATGGACGAAGATGAAAAGGAGATGCTTTCCGAAGCACGAGCCCGGTTAGCCAACACAAAAGGAAAGAAGGCGAAAAGGAAAGCGAGGGAGAAACAGCTTGAGGAAGCCAGAAGACTTGCTTCTTTACAGAAGAAGAGAGAACTGAAGGCTGCGGGAATTGATGTCAGGCAGCGAAGGAGAAAAAGGAAAGGCATTGATTATAATGCAGAAATCCCTTTTGAGAAAAGGCCTCCTCCTGGTTTTTATGACATTGCTGATGAAGACAGACCCGTGGAACAGCCCCATTTCCCAACTACAATAGAAGAACTTGAGGGTAAAAGAAGGATTGATGTTGAGACACAGTTAAGAAAGCAAGACATTGCAAAAAATAAAATTGCACAGAGGCAAGATGCCCCATCTGCTATACTACACGCCAATAAGTTGAATGATCCGGAAACAGTAAGGAAACAAACCAAACTGATGCTTCCGCCACCCCAGATTTCTGACCAGGAACTGGATGAAATTGCAAGGATGGGTTATGCCAATGACCTAGCTGGGAGTGACGAATTTGGAGAAGGTAGTGCTGCAACACGTGCTCTTCTAGCAAATTATGCACAAACACCTGGCCGGGGAATGACTCCTTTACGAACCCCTCAGCGAACACCGGCTAGTAAGGGAGATGCTGTCATGATGGAAGCTGAAAACCTGGCGAGGTTGAGGGAGTCCCAGACACCATTATTAGGGGGAGAAAACCCGGAGTTGCATCCTTCGGATTTTACTGGGGTCACTCCTAAGAGAAAAGAGGTTCAGACCCCAAATCCAATGTTGACTCCCTCTGCAACCCCTGGAGTTGCAGGTCTCACTCCCAGAATTGGCATGACACCTGCAAGAGATGGTTACGCTAGCATGACACCGAAGGGAACTCCTCTCAGGGATGAGCTTCGTATTAATGAGGATTTGGATATGCATGAGCGTGCTAAACTTGAGCTACAAAGAGCTGAAATAAGACGAAGTCTGTGCTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATTGTCATGCAGCCCATTCCAGAAGATGCTGAAGAACCTGAGGAGAAGATTGAAGAGGATATGTCAGATAGAATAGCTAGAGAAAAGGCAGAAGAAGAGGCAAGGCAACAGGCATTACTTAGGAAACGATCAAAAGTCCTTCAAAGGGAGCTTCCTCGGCCTCCAGCTGCATCATTGGAGCTTATAAGAAATTCTTTGGTTAGAGCTGATGACAAGAGTTCCTTTGTTCCACCAACCTCAATTGAGCAAGCTGATGAGATGATAAGAAGGGAGCTTCTTGCTTTGCTGGAGCATGACAATGCTAAGTATCCGCTTGACGAGAAAGTAAATAAGGAGAAAAAGAAAGGAGCTAAGCGTGTGGTAAATGAGCCTGTTGTTCCTGTTATAGAAGAATTTCATGAAGAGGAGATGAAAGATGCTGATAAGTTGATAAAGGATGAGGCCCATTATCTTCGGGTAGCACTGGGACATGAAAGTGAACCCCTTGAGGAATTCATTGAAGCACACAGGACTAGCCTGAATGATCTCATGTTCTTTCCAACCCGTCATGCCTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTGGCAGCTTTGCAGAATGAGTTTGAGAATGTGAGGAAAAAGTTGGACGATGGCAAGGAGAAAGTTGTAAAGCTTGAGAAGAAGGCAATACTCCTCACTCAAGGCTATGAGCTATTGCATTTTTCAGATGAGAGCCAAAAACAGTCTTTGGCCACAAATTGA 2217 0.4592 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDVRQRRRKRKGIDYNAEIPFEKRPPPGFYDIADEDRPVEQPHFPTTIEELEGKRRIDVETQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKQTKLMLPPPQISDQELDEIARMGYANDLAGSDEFGEGSAATRALLANYAQTPGRGMTPLRTPQRTPASKGDAVMMEAENLARLRESQTPLLGGENPELHPSDFTGVTPKRKEVQTPNPMLTPSATPGVAGLTPRIGMTPARDGYASMTPKGTPLRDELRINEDLDMHERAKLELQRAEIRRSLCSGLGSLPQPKNEYQIVMQPIPEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLVRADDKSSFVPPTSIEQADEMIRRELLALLEHDNAKYPLDEKVNKEKKKGAKRVVNEPVVPVIEEFHEEEMKDADKLIKDEAHYLRVALGHESEPLEEFIEAHRTSLNDLMFFPTRHAYGLSSVAGNMEKLAALQNEFENVRKKLDDGKEKVVKLEKKAILLTQGYELLHFSDESQKQSLATN 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01808 738 CDD SANT_CDC5_II 55 106 - -
Aip02g01808 738 Coils Coil 679 713 - -
Aip02g01808 738 Coils Coil 451 471 - -
Aip02g01808 738 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Aip02g01808 738 MobiDBLite consensus disorder prediction 399 413 - -
Aip02g01808 738 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Aip02g01808 738 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 724 - -
Aip02g01808 738 Gene3D - 5 59 - -
Aip02g01808 738 Coils Coil 167 187 - -
Aip02g01808 738 SMART sant 58 105 IPR001005 -
Aip02g01808 738 SMART sant 6 55 IPR001005 -
Aip02g01808 738 MobiDBLite consensus disorder prediction 113 150 - -
Aip02g01808 738 Gene3D - 60 114 - -
Aip02g01808 738 MobiDBLite consensus disorder prediction 380 423 - -
Aip02g01808 738 PANTHER - 1 724 - -
Aip02g01808 738 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Aip02g01808 738 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Aip02g01808 738 Pfam pre-mRNA splicing factor component 406 651 IPR021786 -
Aip02g01808 738 CDD SANT 10 53 IPR001005 -
Aip02g01808 738 Pfam Myb-like DNA-binding domain 10 70 - -
Aip02g01808 738 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01808 Aip-Chr2 79031375 79038404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01808 1 722 MYB-Related Transcription Factor Family AT1G09770 79.258 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip02g01808 Myb_Cef 3e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01808 K12860 - gmx:100801352 1251.11