Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01807 ATGGAGCACGCCGCACTAGACTCCATCCAATTCAACGAGCAAATCCAGGGGCTAATGGCTCCGGCGCCGGAATCCACGAACTCCTTCACGGCGCTCCTCGAGCTACCTCCGCCACAGGCCGTCAAGCTACTCCACTCGCCGGATAAGGCTCCCACCGGTTCCGAAAAACCGCCCTGCCACGCCAGCATCCTGAAACCCTACCCCTCAATCATGAGCATCATCGACGGAACCCGCAAGCTCACGTTCCCTTCCAACACCGCCCTAATCGAGCGCGCTGCGAAGTTCTCCGTGTTCGCCGAAGAGGGACCGCCGGCTCCACCGGTGGCGGAGGTAAAAAACGAGCCGCCGGAGACCGATTCCAACCCAAGCTCGACTCAGTGCGATCCTGCGGTTGAGAACAAGGGCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTAGTTAAGGCGAGGTCAAAGAAGAGCAAGAGTGTCGCTGCCGCCGAAAAGAGGGCAAGGAGAGAGAAGATAAATGCACGGATGAAACTTTTGCAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGCACAGCATTGGTTCTGGATGAAATCATCAACCATGTCCAATCTCTACAGCGACAAGTGGAGTTTTTATCAATGAAACTAGCAGCAGTTAACCCAAGAATTCATTTCAACCTTGACAGCATAATGCCTAATGAAGGGGCATCTCTAATGGACAGTAGCATTCCTAACATGGCTTCACCCCTCATGTGGCCGGAAATCCCAAACAATGGAAATAGAGAACAATATCAGCAACCATGGCAATTTGATGCATTCCAGCAACCAGTTTGGGGAAGGGAAGAAGAAAACCCCAATTTCATGACTCCAGAAAACTCAATGTTGAGTTATGATTCATCAGCTAATTCAGTACCTCTGCAATCAAATCAGTTGAAGATGGAGCTGTGA 939 0.5165 MEHAALDSIQFNEQIQGLMAPAPESTNSFTALLELPPPQAVKLLHSPDKAPTGSEKPPCHASILKPYPSIMSIIDGTRKLTFPSNTALIERAAKFSVFAEEGPPAPPVAEVKNEPPETDSNPSSTQCDPAVENKGAKRKEREKKVVKARSKKSKSVAAAEKRARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIHFNLDSIMPNEGASLMDSSIPNMASPLMWPEIPNNGNREQYQQPWQFDAFQQPVWGREEENPNFMTPENSMLSYDSSANSVPLQSNQLKMEL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01807 312 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 159 IPR024097 GO:0006355
Aip02g01807 312 Coils Coil 158 178 - -
Aip02g01807 312 MobiDBLite consensus disorder prediction 100 163 - -
Aip02g01807 312 MobiDBLite consensus disorder prediction 283 298 - -
Aip02g01807 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 202 IPR011598 GO:0046983
Aip02g01807 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 222 IPR036638 GO:0046983
Aip02g01807 312 Gene3D - 146 223 IPR036638 GO:0046983
Aip02g01807 312 MobiDBLite consensus disorder prediction 116 130 - -
Aip02g01807 312 MobiDBLite consensus disorder prediction 279 298 - -
Aip02g01807 312 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 161 312 IPR024097 GO:0006355
Aip02g01807 312 Coils Coil 192 212 - -
Aip02g01807 312 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 159 - -
Aip02g01807 312 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 161 312 - -
Aip02g01807 312 SMART finulus 157 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01807 Aip-Chr2 78911037 78916004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01807 5 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 44.324 3.04e-74 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01807 - - aprc:113872810 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01807 02 78911037 78916004 Aip02g01807 02 78911037 78916004 ECH
Aip06g00351 06 4100126 4104581 Aip02g01807 02 78911037 78916004 PCT