Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01798 ATGGAGAGTGACAAGATGGAAGATTATGAAGTGATACAGCAGCTTGGAAGAGGAACATTGGGTGCCACTTTTCTTGTTCTCCATAAAACTCAGAAACAACGGTGTGTGCTGAAGAAGATTCGGTTCTCTAAGCAAACAGATAAGTCACAGCTATCATCAGCACCCCAAGAGATGAACCTGATTGCAAAACTAAGTAGCCCTTATATTGTGGAGTGCAAAGATGCTTGGGTAGAAAAGGGGGACTATGTATACATTATATCTGCTTATTGTGAAGGAGGTGACATGGCTCAGTATATAAAGAAAGCCCGAGGATCATTCTTCCCTGAGGAGAGAGTTTGCAAATGGATGACTCAGTTGTTGCTAGCTGTGGACTACCTGCACTCCAATCGAGTACTCCACAGAGATCTTAAGTGTTCCAACATACTCCTCACGAGAGACAATAACATTCAGATAGGTGACTTTGGTCTTGCAAAGCTACTTAATAAAGAAGACCTTCCTTCCCCGGTTATTGGAACTCCAAACTACATGTGTCCTGAGCTTCTAGATAATATACCTTACGGTTATAAATCCGATATATGGACCCTTGGTTGCTGCATGTTTGAAATCGTCGCACATCAACCAGCATTTCGTGCTCCGGACAGGGCAGGACTAATCAATAAAATAAATAGATCCTCCATTTCTCCATTTCCAATTGTTTACACTCCCACACTGAAACAACTGATTAAAAGCATGCTGAGGAGAAATCCAGAACATAGACCTACAGCAGCCGAGTTATTAAGGCATCCTCATTTACTACCTTATGTTCTTCGCTGTCGCAATGCATCGCCTGTTTTTCTTCCGGTACATCTCATAAATAGTAGCCCAAAGGATAAAACAAAGCAATCTCCCAAAAAATCTAGTGGTGGCAGAGATCATAGAGAAAAACAAGAAGGATTTGCAAATCATATGGAGCAAGTTCGTCTTATTGAGGGAAATGCGGAGGTACATGTAACTAATCATCATAATGATGGCAAACTAACAGTCTCGACAAGTGCCGAAGACTTCCTTGAAACCAAGATGGTTGATCCTACCAGCTACACGATGGAAACTGCAGCCAGTGTTAGTGGCTCGAAAGATGGGTCAATTACTTCTGATTCAACCATTTGCAGTGTGTGCAAGGAAGCAGACTTTAAAGGTAGACTTGCGAAGGAAGCAACAGAAAGTGAGATCACATCAAAGAGTACACTAGATTCTGTGAATGTGGAACAAGGATTTGCTGCTGAAAATTTTCTCCAGTCAGATTCAGTTAATGTAACTACAGCAGCCACAAAAATCGAAGACACTCTTCCCAAACCCATGGACTCCTGTAAATCAATAATGTCTAGTCAAGACAGTACTGTCGGCAATGATAAAGATGACTTTGTCAACGAAGAAAGATCATCCCCAGTTTTGCAGCCGGTCAGGCTCGAGAAAGACACCGAATCTGATGGCAGCTTAAAGAAAAGTGAAAACCATGATGCATTTACTGAAGTCTCACATTTGGACTGCTTGTCATCTGCAAGTAACGATACACTTCCCGGCAAGGATGAAGGTGTTGCAACCACAGCTGCGCATAAAGAAGGCAGTAATGCTGCAGTAGTTGTTGATAAAACGACAAATGGCATTTCTTTAAGCAGACCTACTTCAAAAGGTGGGGACGGAACAACAAAGAGCGTGTTGATTAATAGATCCCAGAACAGAGCTGATGCTCTGGAAGCTTTGCTTGAGTTATGTGCTCAGCTGCTTAAACAAGGGAAACTTGATGAACTGGCTGCTGTAAACCTAATATGGGAGGAAATGTGTATTGATTGCCGCAAGTCCTTCCGCCTTGAGAAATTCGTCCAAGACCTTAACTCCCTCCAGACCCTACACAAACCGCACGTCTCCTCCGATCTCGACTTCTTTCTCTCCGTCGTTGTCTTCGACAGCGAGGGAGTCTATTACTTCATCGAACAACTCGTGTGGCTCGCCAAATCGGGACTCATCGATCTGAAGTGGTCACGTTCGTTCAGAGGAGGTCTGAGGAGATGGATGGAGATGAAACAGGGTTAG 2070 0.4333 MESDKMEDYEVIQQLGRGTLGATFLVLHKTQKQRCVLKKIRFSKQTDKSQLSSAPQEMNLIAKLSSPYIVECKDAWVEKGDYVYIISAYCEGGDMAQYIKKARGSFFPEERVCKWMTQLLLAVDYLHSNRVLHRDLKCSNILLTRDNNIQIGDFGLAKLLNKEDLPSPVIGTPNYMCPELLDNIPYGYKSDIWTLGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPFPIVYTPTLKQLIKSMLRRNPEHRPTAAELLRHPHLLPYVLRCRNASPVFLPVHLINSSPKDKTKQSPKKSSGGRDHREKQEGFANHMEQVRLIEGNAEVHVTNHHNDGKLTVSTSAEDFLETKMVDPTSYTMETAASVSGSKDGSITSDSTICSVCKEADFKGRLAKEATESEITSKSTLDSVNVEQGFAAENFLQSDSVNVTTAATKIEDTLPKPMDSCKSIMSSQDSTVGNDKDDFVNEERSSPVLQPVRLEKDTESDGSLKKSENHDAFTEVSHLDCLSSASNDTLPGKDEGVATTAAHKEGSNAAVVVDKTTNGISLSRPTSKGGDGTTKSVLINRSQNRADALEALLELCAQLLKQGKLDELAAVNLIWEEMCIDCRKSFRLEKFVQDLNSLQTLHKPHVSSDLDFFLSVVVFDSEGVYYFIEQLVWLAKSGLIDLKWSRSFRGGLRRWMEMKQG 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01798 689 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g01798 689 MobiDBLite consensus disorder prediction 452 498 - -
Aip02g01798 689 MobiDBLite consensus disorder prediction 285 309 - -
Aip02g01798 689 MobiDBLite consensus disorder prediction 482 498 - -
Aip02g01798 689 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g01798 689 Gene3D Transferase(Phosphotransferase) domain 1 92 336 - -
Aip02g01798 689 SUPERFAMILY Protein kinase-like (PK-like) 6 300 IPR011009 -
Aip02g01798 689 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g01798 689 MobiDBLite consensus disorder prediction 291 309 - -
Aip02g01798 689 Pfam Peroxisomal biogenesis factor 11 (PEX11) 585 674 IPR008733 GO:0005779|GO:0016559
Aip02g01798 689 CDD STKc_Nek 8 264 - -
Aip02g01798 689 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Aip02g01798 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Aip02g01798 689 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 472 599 - -
Aip02g01798 689 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 4 470 - -
Aip02g01798 689 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 472 599 - -
Aip02g01798 689 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01798 Aip-Chr2 78450354 78459677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01798 15 264 MAP Kinase Kinase Kinase AT1G53570 31.890 1.26e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aip02g01798 Pkinase 5.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01798 K08857 - gmx:100793379 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01798 02 78450354 78459677 Aip02g01798 02 78450354 78459677 ECH
Aip06g00357 06 4165193 4170405 Aip02g01798 02 78450354 78459677 PCT