Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01788 ATGGCAGACCCTTACTCTAATTTCTTCAGAGGCTTCTTCCACCATAACAATAACCATAACCATTTCAATTATAATCCCACTCATCCTCCTCCTCTTTCTTCCTCTCATCACCACCACCACCACCACCACCACCATCCTTATCTTCACAACTTCATCAAAACCACCAATTACAACAACAATAATAATAGCACCTTTCTCCACCATCAAATTACAACTGCCACTACTTCTTCTTCTTCTTCTTCTTATTCTTATTATTCTTCACCCCCTTCCCCTCCTCTCAGAGAAGCTCTCCCACTTCTCAGTCTTAGTCCAGCAAACCAGGAACGCGAGGAACATCACTATCATCATCACCATGATGATTATACTCATCAACCAGAAAAAGATCAAGAAACACAAGATCATAACAAAGACGACCAAGAAGAAGACAACAACAATAGTGTGACGGTTGCACTTCACATAGGGTTACCAAACCCTAGTGCTGCTGAGCTGGCAACAATTACCTCCATAGAATCTTCTTCTAACAATAATAACAATAGCAATTCATCATCAACGGAGAAAGAACAACATCATCATGAAGAAGAAGGAGAAGGGAGTGAAGAGTCGCAGTGTCATAAAGGGTTCTTGGGTACAAGACTCAACAAGGGACAGTACTGGATCCCAACCCCAACCCAGATTCTCATTGGTCCAACTCAATTTTCTTGCCCTGTTTGCTACAAAACTTTCAACAGATACAACAATATGCAAATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCTGAATCTCTAAGAGGAACTCAACCAACAGGTATGCTTAGGCTTCCATGTTATTGCTGTGCACCAGGTTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGATTTTAGAACCCTCCAAACTCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCCGGAAATGCGGCAAGGCCTTCGCCGTCCGAGGCGATTGGCGGACGCATGAGAAAAATTGTGGCAAACTTTGGTATTGCATCTGTGGATCCGATTTTAAACACAAGAGGTCGCTTAAGGATCATATAAAGGCTTTTGGGAGCGGACACGCCGCGTTTGGGATCCACGGCGGATTATTTGAAGAGGAGGAGGAGCCGGCATCTGAAGTCGAACAAGATAATGACGAACTCAACCACGATGGCGATGAGGTTTCACCGTCGACCCCTCAGTCCGTGACTCAGTCGGATTCTCGCACGATTTCTCAGGAGGTGATTGCTATCGAGGCTGCCATAGCTGTGGTTGAGGCAGAAGTAGAGGTTGTAGGGGTTCCGGTTTCTGAGGCTAGCAGGAAGCGGAGAAGGAGTGTTGAGGATTGTTCCGGAGAGAACTTGGAGGAGGATAGACCTGTGCCTTccgtgatggaccggagtttcgatgctccgacttttatggtcaacatctcctgccagGTGACCCTCTTGGACCGCAAGTTTCGCCAGTCCCAGGCGGAGACTGAGAGGCTGATGGAGCAGCTGGAGGCAGCCAAGATGGCTCGTCTGAAGGCTATGAAGGATAAGCAGGCAGCCGATGTTGAATTGAGGGTTGCTACCATGCTTGCTGAGGCGGAGTTGCTAAAGGCTGAGGTGGCCAAGTTGAAGAAGGAGAACGAGAGACTACTTACGAATGCCAAGGATGTGATCTCGGCAATGGAGGAGACCTTGAAGGCTCATGTTTGGGTGCTAGCCCCTGATGCTGATGTGTTCGTTAAGGGGGCATTCAGAACTGTGAGAGATGAGGAGATCGTGGACTTGGAATGA 1809 0.4555 MADPYSNFFRGFFHHNNNHNHFNYNPTHPPPLSSSHHHHHHHHHHPYLHNFIKTTNYNNNNNSTFLHHQITTATTSSSSSSYSYYSSPPSPPLREALPLLSLSPANQEREEHHYHHHHDDYTHQPEKDQETQDHNKDDQEEDNNNSVTVALHIGLPNPSAAELATITSIESSSNNNNNSNSSSTEKEQHHHEEEGEGSEESQCHKGFLGTRLNKGQYWIPTPTQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAFGIHGGLFEEEEEPASEVEQDNDELNHDGDEVSPSTPQSVTQSDSRTISQEVIAIEAAIAVVEAEVEVVGVPVSEASRKRRRSVEDCSGENLEEDRPVPSVMDRSFDAPTFMVNISCQVTLLDRKFRQSQAETERLMEQLEAAKMARLKAMKDKQAADVELRVATMLAEAELLKAEVAKLKKENERLLTNAKDVISAMEETLKAHVWVLAPDADVFVKGAFRTVRDEEIVDLE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01788 602 SMART c2h2final6 316 336 IPR013087 -
Aip02g01788 602 SMART c2h2final6 232 254 IPR013087 -
Aip02g01788 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 336 IPR013087 -
Aip02g01788 602 MobiDBLite consensus disorder prediction 448 470 - -
Aip02g01788 602 SUPERFAMILY beta-beta-alpha zinc fingers 201 254 IPR036236 -
Aip02g01788 602 Gene3D Classic Zinc Finger 293 369 - -
Aip02g01788 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Aip02g01788 602 Gene3D Classic Zinc Finger 231 254 - -
Aip02g01788 602 MobiDBLite consensus disorder prediction 184 201 - -
Aip02g01788 602 MobiDBLite consensus disorder prediction 170 203 - -
Aip02g01788 602 MobiDBLite consensus disorder prediction 107 143 - -
Aip02g01788 602 MobiDBLite consensus disorder prediction 379 414 - -
Aip02g01788 602 SUPERFAMILY beta-beta-alpha zinc fingers 297 336 IPR036236 -
Aip02g01788 602 MobiDBLite consensus disorder prediction 381 395 - -
Aip02g01788 602 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Aip02g01788 602 MobiDBLite consensus disorder prediction 448 472 - -
Aip02g01788 602 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 60 393 - -
Aip02g01788 602 MobiDBLite consensus disorder prediction 22 46 - -
Aip02g01788 602 MobiDBLite consensus disorder prediction 400 414 - -
Aip02g01788 602 PANTHER ZINC FINGER PROTEIN WIP2 60 393 IPR043584 GO:0003700|GO:0010468
Aip02g01788 602 Coils Coil 495 515 - -
Aip02g01788 602 Coils Coil 525 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01788 Aip-Chr2 78051139 78058772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01788 93 392 C2H2 Transcription Factor Family AT3G57670 68.051 9.61e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g01788 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01788 - - aip:107628393 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01788 02 78051139 78058772 Aip02g01788 02 78051139 78058772 ECH
Aip02g01788 02 78051139 78058772 Aip08g00361 08 2767712 2769411 ECH
Aip02g01788 02 78051139 78058772 Aip03g00589 03 5735689 5737703 ECH
Aip06g00359 06 4208694 4210421 Aip02g01788 02 78051139 78058772 PCT