Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01785 ATGGGATTGGGTGCTGCAGAGGAATTTTATCCCCAAAGACCTAGTGAGGCTGATTGTATCTACTATTTGAGGACTAGATTCTGTGGCTATGGTTCCCGCTGCTGTTTCAACCATCCCCATGACCGGGCCGAGGCTGTTGGTGCTGTTGCTAGGGCTAGAGGATGGGAGTACCTGGAGCCAATTGGTCAGCCTTTGTGCCAGGTGTTTTTGTCTCTTTCATTTGATGAAGATCTTGGGATGTCTAAGAAGAAAGATGAAAGAGAAGTAAAGGATCTTCTAGGCTGGCTTGACCTTCCGGTGAGCGTGATCATCAGGTGTGTGGAGTTGTGGTGGCCTGTATCCATTGCAAAGCAAAGGAATATTTTCGGCGGTTGCGTTTTGGACTATGTAGGCTTCGATTTGCATAATGCTATATCACTACAATGTGTTTACATGACACCAGAATTTGTTGGCTACTGCTCTAGGTAA 468 0.4637 MGLGAAEEFYPQRPSEADCIYYLRTRFCGYGSRCCFNHPHDRAEAVGAVARARGWEYLEPIGQPLCQVFLSLSFDEDLGMSKKKDEREVKDLLGWLDLPVSVIIRCVELWWPVSIAKQRNIFGGCVLDYVGFDLHNAISLQCVYMTPEFVGYCSR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01785 155 Gene3D - 6 86 - -
Aip02g01785 155 ProSiteProfiles Zinc finger C3H1-type profile. 13 41 IPR000571 GO:0046872
Aip02g01785 155 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN-RELATED 1 72 - -
Aip02g01785 155 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 16 39 IPR000571 GO:0046872
Aip02g01785 155 SUPERFAMILY CCCH zinc finger 15 42 IPR036855 GO:0046872
Aip02g01785 155 PANTHER PROTEIN PHOSPHATASE RELATED 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01785 Aip-Chr2 77769079 77771112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01785 8 70 C2H2 Transcription Factor Family AT5G18550 57.143 5.53e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip02g01785 zf-CCCH 8.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01785 - - csin:114302989 101.679