LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g01759	ATGAATCGGATGGATTTCTTGGATTTCAAAAACTTCGAGATTTTGATTTTAGACGAGGCTGATAGACTTTTAGATATGGGATTCCAGAAGCAGATAACTTCCATTATATCTCTTTTGCCTAAGCTTCGAAGAACTGGCCTGTTTTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTGCTAGAGCAGGATTAAGAAATCCTGTGAGGGTTGAAGTTCGGGCAGAGGCGAAACTTTTAAATGCTCCTGCAGCATCAAAACAACCTGAATCTACAAAAACACCTTCTGGGCTTCAAATTGAGCTTGTTGTCATTTTGATTTTGCAATACTTGGAATGTGAGGCAGATAAGAAGCCATTACAGCTAGTAGACATCCTTATTAAGAACCGCTCAAGAAAAGTTATAATATATTTCATGACTTGTGCTTGCGTTGACTATTGGGGAGTTGTCCTTCCACGCCTTTCTGTTTTGAAAGGCTTCTCCTTGGTTCCTCTTCATGGAAAGATGAAGCAGACTGTTAGGGAGAAAGCATTAGCCTCCTTTACATCCCTTTCAAATGGAGTTCTGCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACACAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCAGTTGTCTTCTTATTGCCAAAGGAGGAGTCTTACGTAGAATTCCTACGTATAAGAAGAGTCCCTCTTCAAGAGAGAAAATGCTCTGATGATGCACCTGATGTTGTACCTCAGATTCGTTCTGCTGCGAAAAAAGATCGTGATGTTATGGAGAAAGGAGTCAGGGCATTTGTTTCCTACATCCGTGCATACAAGGAGCATCACTGTTCATATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAATTGGCCATGGGACATGGCTTATTGCAGCTTCCTCTAATGGCAGAGGTAAAACATCACTCACTTTCTACTGAGGGATTTGTACCAGTTGATGATATCAATTTGGAGGACATTAAATACAGAGATAAATCTCGTGAAAAACAAAGGAAGAAAAACCTGCAAGCAATGAAAGAAGCGAAAGAGAAGGAGAAAGAGGCAAAACCAGAAAAGCCAAGCAAAACTCCCAGTGCACCTACTGCCATGAGGAAGAAAACAGCCCGACAGAGACGTGCTCAGCAGACAATTGAAGATGAGGAAGAGTTGATGCAAGATTACCGCTTGTTGAAGAAACTGAAGAAAGGGACTATAGATGAGAATGAATATGCTAAGTTGACAGGCGCTGAGGAATTACTCTGA	1338	0.4141	MNRMDFLDFKNFEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELARAGLRNPVRVEVRAEAKLLNAPAASKQPESTKTPSGLQIELVVILILQYLECEADKKPLQLVDILIKNRSRKVIIYFMTCACVDYWGVVLPRLSVLKGFSLVPLHGKMKQTVREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERKCSDDAPDVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGHGLLQLPLMAEVKHHSLSTEGFVPVDDINLEDIKYRDKSREKQRKKNLQAMKEAKEKEKEAKPEKPSKTPSAPTAMRKKTARQRRAQQTIEDEEELMQDYRLLKKLKKGTIDENEYAKLTGAEELL	445

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g01759	445	MobiDBLite	consensus disorder prediction	357	385	-	-
	Aip02g01759	445	Pfam	Domain of unknown function (DUF4217)	270	327	IPR025313	-
	Aip02g01759	445	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	4	248	IPR027417	-
	Aip02g01759	445	SMART	helicmild6	144	229	IPR001650	-
	Aip02g01759	445	CDD	SF2_C_DEAD	106	238	-	-
	Aip02g01759	445	Pfam	Helicase conserved C-terminal domain	117	229	IPR001650	-
	Aip02g01759	445	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	16	24	IPR000629	-
	Aip02g01759	445	PANTHER	ATP-DEPENDENT RNA HELICASE DDX55	6	442	-	-
	Aip02g01759	445	SMART	DUF4217_3	267	330	IPR025313	-
	Aip02g01759	445	PANTHER	RNA HELICASE	6	442	-	-
	Aip02g01759	445	Coils	Coil	357	379	-	-
	Aip02g01759	445	Gene3D	-	108	335	IPR027417	-
	Aip02g01759	445	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	120	276	IPR001650	-
	Aip02g01759	445	Gene3D	-	1	81	IPR027417	-
	Aip02g01759	445	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	1	70	IPR014001	-
	Aip02g01759	445	Pfam	DEAD/DEAH box helicase	7	59	IPR011545	GO:0003676\|GO:0005524
	Aip02g01759	445	MobiDBLite	consensus disorder prediction	357	413	-	-
	Aip02g01759	445	Coils	Coil	395	422	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g01759	Aip-Chr2	76569279	76572562	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g01759	11	243	Eukaryotic Initiation Factors Gene Family	AT3G13920	29.787	1.95e-23	100

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g01759	K14809		-	gmx:100807011	731.48