LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g01747	ATGGAGGGTGCGTCGACAGAGGCAATACCGATAGAGGGTTACGAAAGAGGGAGCGAGGTTGCGAATCCGAGGAGGAGGCTTGCGATAGAGGGTGGTAGGGTTGCGACAGAGGGGAGGGTTACAATAGAGGGTGTGAGAGAGGGTTGCAATAAAGGGTGCGAGAGAGGGCTGCAAGAGTTCTTAGTGTTGAAGATGAAGATGGAGCCCTTGGCCCCCGTATGGTCTCCACCGCCGCCGCAAGCTAAGCCCTCGCCTTCACCGACGTCGCCAAATCCAACAACACCCTCGACGGCACCACAACTGACATCGAGAAAATCAACGAGATCTTCTTCGATCTGCAGTCGTATTCAGTTCCTACCACATCGCCGTCCTCCTTTCGGTTCCCGCCGTCAGTCCGTAGTCTTCTGTTCTTGCCGCCTTGACGTCCTCCGTGCTTGCTGCCTTGCAATACTCAGTTCCTGCCGCATCACCGTCCTCCGTTCTCGTCGGTTCGCCGTCCTCGTTTCGGCGAATCAACGTCCTCGGCTTCATTGTTCAGGACTTCAGACTAGTAATTGTTTTTGGGTCCTCAAGCTTCAAACAAACATGGCTGACAAAGCGGTTACCATCAGAACAAGGAAGTTTATGACTAACAGGCTCCTCTCCAGAAAGCAATTCGTCATTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCTAAGGCTGAGCTTAAGGAGAAGCTTGCTAGAATCTATGATGTTAAGGACCCCAACACGGTGTTTGTGTTCAAGTTCCGCACCCATTTTGGAGGTGGCAAATCCACTGGTTTTGGTTTGATTTATGACACTGTTGAGAATGCTAAGAAGTATGAGCCTAAGTACAGACTTATTAGGAATGGACTTGATACTAAGGTTGAAAAGTCGAGGAAGCAAATGAAGGAGAGAAAGAACAGGGCAAAGAAGATCCGTGGAGTAAAGAAGACCAAGGCTTCTGATTCTGCCAAGGCTGGAAAGAAGAAATGA	999	0.4995	MEGASTEAIPIEGYERGSEVANPRRRLAIEGGRVATEGRVTIEGVREGCNKGCERGLQEFLVLKMKMEPLAPVWSPPPPQAKPSPSPTSPNPTTPSTAPQLTSRKSTRSSSICSRIQFLPHRRPPFGSRRQSVVFCSCRLDVLRACCLAILSSCRITVLRSRRFAVLVSANQRPRLHCSGLQTSNCFWVLKLQTNMADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDSAKAGKKK	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g01747	332	Hamap	30S ribosomal protein S24e [rps24e].	199	301	IPR001976	GO:0003735\|GO:0005840\|GO:0006412
	Aip02g01747	332	PANTHER	40S RIBOSOMAL PROTEIN S24	196	332	IPR001976	GO:0003735\|GO:0005840\|GO:0006412
	Aip02g01747	332	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	201	303	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Aip02g01747	332	Pfam	Ribosomal protein S24e	220	298	IPR001976	GO:0003735\|GO:0005840\|GO:0006412
	Aip02g01747	332	MobiDBLite	consensus disorder prediction	72	94	-	-
	Aip02g01747	332	MobiDBLite	consensus disorder prediction	72	112	-	-
	Aip02g01747	332	MobiDBLite	consensus disorder prediction	297	332	-	-
	Aip02g01747	332	MobiDBLite	consensus disorder prediction	95	112	-	-
	Aip02g01747	332	ProSitePatterns	Ribosomal protein S24e signature.	261	283	IPR018098	-
	Aip02g01747	332	PANTHER	40S RIBOSOMAL PROTEIN S24	196	332	-	-
	Aip02g01747	332	Gene3D	-	193	327	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g01747	Aip-Chr2	75732801	75736973	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g01747	196	327	Cytoplasmic Ribosomal Protein Gene Family	AT5G28060	87.879	1.58e-82	244

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g01747	K02974		-	gmx:100499852	241.506