Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01705 ATGTCAAGCAGCAGGAACACTCATTGGTGTTACAGTTGCAGGAGGCCAATTCGACTGGGATGGCGAGATGCGGTTTGCCCTAGCTGTAATGAGGGATTTATTCAGGAACTTAATGATATGCAAATGGCAGACAGAAGTCATAGCCATGATATCAGGGCACAATCGGAATCTATTTCGGAACAAGGGGCAGGTTTTGCTCCTTTGTTGATATTTGGTGGTCAAATTCCTTTTAGATTATCTGGACATGGTGGTTTTGAGGCTCTCTTTAATGGGACTCCAGGTATTGGTCTTACACGAGGCAACACAGGTGATTATTTTATTGGTCCTGGACTTGAAGAACTGTTTGAACAGCTCTCAGCTAATACTCGCCAAGGGCCTCCGCCTGCATCCAGATCCTCTATAGATGCAATGCCTACTATCAAAGTTACACAGAGGCATCTTCGTTCGGATTCACATTGTCCGGTGTGCAAAGATAAATTTGAGGTAGGGACTGAAGCAAGACAAATGCCATGTAACCATATGTACCACTCAGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCACCACAAGGATTGAGTGGTAACCAAGGCTTGAATGGCCGAAGTAGAGGTAACTTTAGTGGCAGCAGTAGTGGTAGGAGTGGTAGGGAGAACCAGGGAAGGCGAAATCCGTTTTCATTTTTGTGGCGTTTCCGCAGTTCTAATTCTAGCAGCAATGATAGAGCAACCCGAAGCAGCTCACCAACACCATCATTCCCCGATAGTAGTCATCACACGGAGTATTCTGGGTGGCCATTTGAATGA 834 0.4592 MSSSRNTHWCYSCRRPIRLGWRDAVCPSCNEGFIQELNDMQMADRSHSHDIRAQSESISEQGAGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGIGLTRGNTGDYFIGPGLEELFEQLSANTRQGPPPASRSSIDAMPTIKVTQRHLRSDSHCPVCKDKFEVGTEARQMPCNHMYHSDCIVPWLVQHNSCPVCRQELPPQGLSGNQGLNGRSRGNFSGSSSGRSGRENQGRRNPFSFLWRFRSSNSSSNDRATRSSSPTPSFPDSSHHTEYSGWPFE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01705 277 MobiDBLite consensus disorder prediction 203 277 - -
Aip02g01705 277 CDD RING-H2_RNF126_like 153 194 - -
Aip02g01705 277 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Aip02g01705 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 41 - -
Aip02g01705 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 41 258 - -
Aip02g01705 277 SUPERFAMILY RING/U-box 133 200 - -
Aip02g01705 277 SMART ring_2 153 193 IPR001841 -
Aip02g01705 277 MobiDBLite consensus disorder prediction 238 268 - -
Aip02g01705 277 MobiDBLite consensus disorder prediction 203 231 - -
Aip02g01705 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 200 IPR013083 -
Aip02g01705 277 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Aip02g01705 277 Pfam Ring finger domain 152 194 IPR001841 -
Aip02g01705 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 41 - -
Aip02g01705 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 41 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01705 Aip-Chr2 73297873 73298805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01705 88 207 C3H Transcription Factor Family AT5G01980 40.323 1.06e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01705 K11982 - gmx:100787523 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01705 02 73297873 73298805 Aip02g01705 02 73297873 73298805 ECH