Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01654 ATGAACTTTCAACTTCCACAACGGGATAATGATTTTGGTTATTACGGGAATAGTAGTCAGGACGATGAGAGCAGAGATAGCCGAGGTGGTGGGGCAATGGCAAGTCACAGTAATGGGAATGTGAATGCGAATGGAAGGGAGGTAAATTTGTTGAAGAGAGCATGGTCTCAAAACAGTGACGAGGAGGAAAGGAGTCGGTTTTATGGAACGTGTATCACAGAGGAGCGATATAGATCGATGCTTGGAGAGCATGTCCAAAAATACAAGAGGAGGTTCAAGGACACCTCATCTACTCATGCCCAAAATCAGGTTGCTGTTCCACCTGTTCAAAGTAGCAGTGCCTCAAAAGCTCGAAAGTCTGGGAATGATCACTATGGAGGACTGCATGCTGCAGAGATTGCATCTGAATGGCTATATGATTCCAATTCTCAGAAACCAGGAAACTACCATGATGCTAATTTCCTGCAGCGATATGCCTCTGATAGGACTATGTATGAACCTGCTTCTTTGGACATTACTGATGGTATCTCTTATAAGATCCCTCCAAAATATGATAAGCTAGCTTCAATGCTGAACCTGCCAAACTTCTCAGATATCCATGTAGATGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTACTGATAAAAGGTTCATGACTACAAACCGAGGAGGCATGGGGGAGCCTATGTCCCAATATGACTCACTTCAGGCACGCTTGAAGGCCATGTCCGCTTCTAATTCACCTCATAAGTTCAGTCTGAAAGTGTCCAATGTCGGTTTAAATTCCTTCATCCCAGAGGGGGCAGCTGGAAACATAAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAAGGTGATACTTATGAGATCATTGAGCGAAGCCTACCTAAGAAGCAAAAGGTGAAAAAAGATCCTGCTTTGATTGAGAAGGAGGAAAGGGATAGAATTGGTAAGATTTGGGTAAACATTGTCAGAAGAGACGTTCCAAAACATCATAGGAATTTCACAATTTTTCATCGAAAGCAACTGATGGATGCCAAGAGGTTCTCAGAGAATTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCACTTAGATGGACTCGGGGTGCCAGCATTCGCACCCGCAAACTAGCTAGAGACATGTTGTTTTTCTGGAAACGAGCTGATAAGGAGATGATTGAATTGAGAAAAAGAGAGGAAAAAGAAGCTGCTGAAGCATTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAACAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTCTACAGTCACTTCATGCAGAACAAATCAAGCTTATTATCTTCAGAGGCTTTACCAATGGAAGATGAAAAAGCAGATGATCAAGATGCACTTTTTGACTCTTCAGATGCTGGCCCAATTGAGGATGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCCAAACAAAGAAAGTTGACAAGTGCTTTCGACAGTGAGTGCCTGAGGCTGCGCCAGGCTGGTGAAGCTGATCCACTTTCACAGGAGGTAGCAGGAGCGAGTGACATTGATTTGCAAACTCCCTCAACTATGCCTGTGGCATCTACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACAATTCAGGCTATGGTATTTTTGGCCCATTTAGCTGAGGAGAAAAATATATGGGGGCCTTTTCTGGTTGTTGCACCTGCATCTGTTTTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAACTCAAGAGACTTCCTTATTGGGGAGGTGTTGCCGAGCGATCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTATATCGTAGGGACGCTAAATTCCACATTGTCATCACTAGCTATCAGCTGTTAGTACAAGACGAGAAGTTTTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAGGCTCAAGCAATAAAAAATTCAACCAGCATAAGATGGAAGACACTCCTTAGCTTTAATTGTCGGAATCGCCTTCTTCTTACTGGCACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAGTGGTTTTCGAAAGGCATTGAGAACCATGCAGAACATGGTGGCACCTTGAATGAGCATCAACTGAACAGATTGCACTCAATTCTGAAGCCTTTCATGTTGCGGCGCGTTAAAAAGGATGTAGTTTCTGAGCTGACTAAGAAAACTGAGGTTATGGTGCATTGCAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAACTTTTCGATAGTAATCGTGGGCAACTCAACGAGAAGAAAATCCTGAATCTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGTAGCACATACTTCTATTTTGCAGAGATTCCAAATTCCCTTCCACCTCCCCCATTTGGGGAGTTGGAGGACATATACTATCCTGGAGGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTACCAAGAGATTATGCAAAGATCTGAGACTTTCAGTGCGACTGTTGGTCATGGTGTCTGCAGAGAATCTTTTCAGAAACATTTCAACATTTTTACACCGGAAAATATTTATCGCTCTATGATCTCAGAAGGTGTGGTTGTTAATAGCGGAAACTTTGGTTTTACTCGTTTGGTGGATTTGTCTCCACAAGAGGTGACATTTCTGGCCAGTAGTTCTTTCTTGGAGAGACTATTGTTTTCTATGATGAGATGGGAACGTAAATTCCTTGATGAATTTATAGACTTTCTTATGGAGACCACAGTAAGTGATCCTGAATGTAGTTACCTGGAAAAAGGAACAGTGAGAGCTGTTACTAGAATGTTATTATTGCCATCAAGATCTGAGGCTCAGTTTCTTGAACGAAGGTTTGCAACTGGGCCCACCTGTGATCCTTTTGAGGCTTTGGTCATCTCCCATCAGCATAGACTTTTATCCAATGCAAGGCTTCTTCACGCAGCTTACACATATATCCCACCGACTAGAGCTCCACCAATTGCTGCTTATTGCCCAGATCGTAACTTCTCCTATAAAATGATTGAAGAATTGCATGATCCTTGGGTTAAGAGGTTGTTTGTAGGATTTGCGCGTACATCTGAATCTACTGGTCCTAGAAAGCCTGTTTGTTCTCCTCATCATTTAATTGAAGAGATTGATTCTGAACTACCTATTTCACACCCTGCACTTAAGTTCACACATGAAGTTTTTGGCTGTTCACCTCCGATGCATAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATACTATTGAAACGCTTGCGAGCAGGAAATCATCGTGTTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGATTATATGAACTATAGAAAATATAAGTATTTTCGACTTGACGGGTCATCTACTATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAGGACAGGAGTGACGTATTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTAGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAAAGTGACTGGAATCCAACGTTGGATCTGCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATACTTCTTAGAGCAAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCTCCGGAGGATGTCGTATCTTTGCTTTTGGATGATGTCCAACTTGAACAGAAATTAAAGGAAATCCCTATTCAGGTAAAGGATAAGGAAAAGAAAAAGAAACCAACTAAGGGTATACGTGTAAATGAAGATGGTGATGCATCTCTGGAGGATCTAACAAACTCTACAGCCCAGGGTACTGCAGATTTTGATCTTCCGATGGACCCAGAGGGATCAAACGCCAGTAATAAAAAGAGAAAAGCTGCTTCCAGACCAAGGAATTCTCAAAAGCCAAGTGAATCTGGCATTATGGCTATAGATTATGAATTGGATGATAACCACCTAACTACTGAACCAGTGGGCCACAAACCAAAGAGACCCAAAAGGATGAAGAATGTAAATGAAAAGTTTGAAGAGTCTTTTACTTCATCGGCTACCATATTCCCAGAGAAGACTTAA 4467 0.4182 MNFQLPQRDNDFGYYGNSSQDDESRDSRGGGAMASHSNGNVNANGREVNLLKRAWSQNSDEEERSRFYGTCITEERYRSMLGEHVQKYKRRFKDTSSTHAQNQVAVPPVQSSSASKARKSGNDHYGGLHAAEIASEWLYDSNSQKPGNYHDANFLQRYASDRTMYEPASLDITDGISYKIPPKYDKLASMLNLPNFSDIHVDEFYLKGTLDLGSLAAMMATDKRFMTTNRGGMGEPMSQYDSLQARLKAMSASNSPHKFSLKVSNVGLNSFIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEERDRIGKIWVNIVRRDVPKHHRNFTIFHRKQLMDAKRFSENCQREVRMKVSRSLRWTRGASIRTRKLARDMLFFWKRADKEMIELRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSLLSSEALPMEDEKADDQDALFDSSDAGPIEDDPEEAELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQAGEADPLSQEVAGASDIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRRDAKFHIVITSYQLLVQDEKFFRRVKWQYMVLDEAQAIKNSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTKKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFAEIPNSLPPPPFGELEDIYYPGGHNPISYEMPKLVYQEIMQRSETFSATVGHGVCRESFQKHFNIFTPENIYRSMISEGVVVNSGNFGFTRLVDLSPQEVTFLASSSFLERLLFSMMRWERKFLDEFIDFLMETTVSDPECSYLEKGTVRAVTRMLLLPSRSEAQFLERRFATGPTCDPFEALVISHQHRLLSNARLLHAAYTYIPPTRAPPIAAYCPDRNFSYKMIEELHDPWVKRLFVGFARTSESTGPRKPVCSPHHLIEEIDSELPISHPALKFTHEVFGCSPPMHNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQDRSDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPIQVKDKEKKKKPTKGIRVNEDGDASLEDLTNSTAQGTADFDLPMDPEGSNASNKKRKAASRPRNSQKPSESGIMAIDYELDDNHLTTEPVGHKPKRPKRMKNVNEKFEESFTSSATIFPEKT 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01654 1488 CDD SF2_C_SNF 1177 1309 - -
Aip02g01654 1488 Pfam SNF2-related domain 585 872 IPR000330 GO:0005524|GO:0140658
Aip02g01654 1488 Pfam DNA-binding domain 332 459 IPR020838 GO:0003677
Aip02g01654 1488 Pfam Helicase conserved C-terminal domain 1189 1298 IPR001650 -
Aip02g01654 1488 MobiDBLite consensus disorder prediction 1 20 - -
Aip02g01654 1488 Gene3D - 1152 1404 IPR027417 -
Aip02g01654 1488 MobiDBLite consensus disorder prediction 1473 1488 - -
Aip02g01654 1488 MobiDBLite consensus disorder prediction 97 119 - -
Aip02g01654 1488 MobiDBLite consensus disorder prediction 94 124 - -
Aip02g01654 1488 SMART helicmild6 1215 1298 IPR001650 -
Aip02g01654 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 798 IPR027417 -
Aip02g01654 1488 SMART ultradead3 566 761 IPR014001 -
Aip02g01654 1488 MobiDBLite consensus disorder prediction 1 45 - -
Aip02g01654 1488 Coils Coil 408 447 - -
Aip02g01654 1488 MobiDBLite consensus disorder prediction 1372 1390 - -
Aip02g01654 1488 Gene3D - 543 823 IPR038718 -
Aip02g01654 1488 MobiDBLite consensus disorder prediction 1372 1488 - -
Aip02g01654 1488 MobiDBLite consensus disorder prediction 31 45 - -
Aip02g01654 1488 ProSiteProfiles DBINO domain profile. 336 461 IPR020838 GO:0003677
Aip02g01654 1488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1189 1373 IPR001650 -
Aip02g01654 1488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 582 753 IPR014001 -
Aip02g01654 1488 PANTHER CHROMATIN-REMODELING ATPASE INO80 1 1474 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Aip02g01654 1488 PANTHER HELICASE SRCAP-RELATED 1 1474 - -
Aip02g01654 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 1366 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01654 Aip-Chr2 68932202 68948029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01654 623 871 RAD5 or RAD16-like Gene Family AT1G61140 23.548 2.28e-12 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip02g01654 SNF2_N 4.7e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01654 K11665 - gmx:100780615 2363.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01654 02 68932202 68948029 Aip02g01654 02 68932202 68948029 ECH