Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01598 ATGGACAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCTCACCATCTCTTGTTCTCAGTCCCTCAATATCTCAAAGCCTCATACCTACTTGCTCTGGGGTTTCTTTCCTTTCGTCTCAGTTTCAGCTACTGCAACAACTTTCTGTGACCCAAAAAGTTGCAAAGTTGAAAGCATTCGAGCTAGGAATGGAGGTTCTTGGTACCGTCGATGACCTCTTGGATTTCTCATCCGACGTAGGTGAGGATAATGATGCTGTTGTTGACAGACGCAGGAAAGGATTTCCTTGTAACCCAGAATGCAAGCAACCTTCATTCAATCCATTGGCCATGGATGATCCTAACTATTCATTCTCTGAGTTCGCCGAGGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCTGTCGAAACATTTGTCGACATACCATCTATTCAGCCTAACATGTCAAAGCACCAAGGGACAGCCTCAGTGCTTGAATATAGAAGGAGCATCCCCAATAATAACTGCACTAACAACATTACACTCTTAAACGGCTTTGATCACCTGAAGGTCCCTGTCCGAGCAAGGAGCAAGTGTCGTAGTAGGCCTCGCCTGGCTATTGCTGACGTCTCAAGTCATCAGTCCTGGTGGAGACTATCTAGTAGAGAAATTTCCGGAGTAGAAGTGATAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAGAAACTCCACAGTGGCGATCAGGTCCGCTTGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTCAAGTCTGGTCGACTGGTCCCCGAGTACCGTCCTGCAACCAGCCCAACTTTTCGTCACGAGTTGCATTCTAATTCCCATAGGAAGATTATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 924 0.447 MDKXXXXXXXXXXXXASPSLVLSPSISQSLIPTCSGVSFLSSQFQLLQQLSVTQKVAKLKAFELGMEVLGTVDDLLDFSSDVGEDNDAVVDRRRKGFPCNPECKQPSFNPLAMDDPNYSFSEFAEEELEWLSNKDAFPAVETFVDIPSIQPNMSKHQGTASVLEYRRSIPNNNCTNNITLLNGFDHLKVPVRARSKCRSRPRLAIADVSSHQSWWRLSSREISGVEVIKIPTIGRKCQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRLVPEYRPATSPTFRHELHSNSHRKIIEMRKQKQMGMV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01598 307 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Aip02g01598 307 Gene3D - 232 304 IPR013088 GO:0006355|GO:0008270
Aip02g01598 307 PANTHER GATA TRANSCRIPTION FACTOR 72 303 - -
Aip02g01598 307 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Aip02g01598 307 PANTHER GATA TRANSCRIPTION FACTOR 1 72 303 - -
Aip02g01598 307 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Aip02g01598 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 294 - -
Aip02g01598 307 CDD ZnF_GATA 236 284 IPR000679 GO:0006355|GO:0043565
Aip02g01598 307 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01598 Aip-Chr2 63676776 63680318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01598 233 305 C2C2-Gata Transcription Factor Family AT3G24050 83.562 1.08e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip02g01598 GATA 1.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01598 - - ahf:112727508 571.237