Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01593 ATGAGAAGGAGAAGAGAATGGAGAAGCCTACCACTACAAGGTGTAACATCAACTGTGACTATGGGTAAAGCAATGGGAGCAGGTTCAGTTATAGGCTGGGCTGGTGCCGGTGCTCTTAGGACTCCTCAAAATCCTATGATGGGTTTTGGAATGGGTATAGATATGGATATGGACATGGGCATGAACAATGGCCCAGGTGCTGCTATGGAAATGGGAATAGGAATGAACAATGGCCCTGGTGCTAGAATGGGGATGGAGGGCTACAGAGGCATTAATCCATCAATGGGCATGGGCATGGGCATGGGAATGGGTATGGGGCAAGGAGTCCAAATGCAACCCCCTATGGGAATGCCTCCCGAGTCTAACATGCCAGCTCCCGCCATCGCGTCACCGCTGTGCTGCCACTCGGCAGCCTCGAGGGTCTTCCGACCAATTAGAAATCTGTGCTGGTCTGCTGCGCTCCGAGGATCAGCACCAATAATAAATCGGTCAGCGAAGGTACGGGTATTTCGATCCGCAAGAATGGGTTCCCGAAAGGGTGACAACCCTCACTTCGTTGACGGTGCCAGTCCTGGGAAAATCTTTATCGGAGGTCTAGCCAAAGACACCACTTTGGATACTTTTGTTAAGTACTTCGAGAAGTACGGAGAGATAATGGACTCGGTTATCATGAAGGATCGGCATACCGGTAAACCCAGGGGTTTTGGTTTCATCACCTATGCGGATCCATCTGTTGTGGACCAGGTCATCCAGGAGAACCATGTTATCAATGGCAAACAGGTTGAGATCAAGAGGACTATTCCTAAGGGTTCATCACAAGCTAATGACTTCAAAACAAAGAAGATTTTTGTTGGTGGTATTTCAACATCGGTCACTGAAGATGAGTTTAAGAACTTCTTCTTGAAGTATGGGAAAGTTGTGGAACATGAGATTATACGTGATCACACTACTAAACGTTCCCGGGGTTTTGGCTTTATAGTTTTTGACAGTGAAAAAGTTGTTGACAATATGTTAGCAGATGGGAATATGATTGATATGTCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACTTCCTTACTATGATGGTTTTGGTGGATTTGGTGATTCTTTTGGAAGTTTTGGAAATAGCAGTTTTGATCCTGCTTCTTATAGATCACTTGGAGGATTTGGTGGTAGGCTTAGCAGTTATGGTGGATATGGCGGTGGATATGATTTTGGTGGTAGTTTTGGAGGGTCTGGTGGTGGTATTGGTGGTGGCTATGCAGGTTATCGTGGAGAATCGTCATTTGGTTACTCTAGTCGCTATGGTTCCTTCATGGGGGGCCTTGGTGATGGTTATGGTGGGAGTGGTTTAGGTGCTTATGGACGAGGTGGTGGGGCCTATGGAAGCTATGGGGGTGCGGCTACTGGCGGAGGTTATGAACCAAGATCTGGTACTGGTTATGGTGGGGCAGGAGGACATTATGGTAGTAGGGGAGGTTATGGTGGCAGTAGCCGCTACCATCCTTATGCAAGATAG 1578 0.4734 MRRRREWRSLPLQGVTSTVTMGKAMGAGSVIGWAGAGALRTPQNPMMGFGMGIDMDMDMGMNNGPGAAMEMGIGMNNGPGARMGMEGYRGINPSMGMGMGMGMGMGQGVQMQPPMGMPPESNMPAPAIASPLCCHSAASRVFRPIRNLCWSAALRGSAPIINRSAKVRVFRSARMGSRKGDNPHFVDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEIMDSVIMKDRHTGKPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGISTSVTEDEFKNFFLKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNMLADGNMIDMSGTQVEIKKAEPKKSSNSASLPPFASDSRALPYYDGFGGFGDSFGSFGNSSFDPASYRSLGGFGGRLSSYGGYGGGYDFGGSFGGSGGGIGGGYAGYRGESSFGYSSRYGSFMGGLGDGYGGSGLGAYGRGGGAYGSYGGAATGGGYEPRSGTGYGGAGGHYGSRGGYGGSSRYHPYAR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01593 525 SUPERFAMILY RNA-binding domain, RBD 280 443 IPR035979 GO:0003676
Aip02g01593 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 358 IPR000504 GO:0003723
Aip02g01593 525 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 175 525 - -
Aip02g01593 525 SMART rrm1_1 193 264 IPR000504 GO:0003723
Aip02g01593 525 SMART rrm1_1 281 354 IPR000504 GO:0003723
Aip02g01593 525 Gene3D - 269 366 IPR012677 -
Aip02g01593 525 ProSitePatterns Ribosomal protein L16 signature 2. 174 185 IPR020798 GO:0003735|GO:0005840|GO:0006412
Aip02g01593 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 268 IPR000504 GO:0003723
Aip02g01593 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
Aip02g01593 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 339 IPR000504 GO:0003723
Aip02g01593 525 Gene3D - 192 268 IPR012677 -
Aip02g01593 525 SUPERFAMILY RNA-binding domain, RBD 174 272 IPR035979 GO:0003676
Aip02g01593 525 PANTHER OS08G0320100 PROTEIN 175 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01593 Aip-Chr2 63309964 63313966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01593 194 351 Eukaryotic Initiation Factors Gene Family AT2G23350 23.750 8.41e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01593 K12741 - gmx:100801373 439.499