Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01589 atgattattatatacagtatctcttcttcccttctcCTCCGTCCCATAATTGTGGTCCGCCATAATTATTGTTCTGGTGGCCTAGGGCCTCTCGAGGTGGAGACGCTGTTCTGGAAGGCGACCATTGACAAGCCGTTCTCAGTGGAGTATGCGAACGACATGCCGGGCTCGGCGTTCAGCTGGAAATGCAGGGAGGAGTGTGCGGCGGCGCTAGCAGAGTCGGCGTGGAATATAAGGGAGATTTCGAGGGCAAATGGTTCGTTGTTGAGGTTCATGAAGGAGGAGATACATGGTGTTACTTCTCCTATGGTGTATTTGGCTATGTTGTTCAGCTGGTTCGTTTGGCATGTTGAGGACCATGACCTCCATAGCTTGAATTACCTTTACATGGGTTCTGGGAAGACCTGGTATGGCGTGCCGAGAGATGCAGCCGTGGCGTTCAAAGATGTTGTTAAGGTTCATGGATATGGCTCTGAGATTAATCCTCTTGGTGAGTTTTCTTCACTTTTTGCAGGGGATAACAGAGTATTTGTGTCTTTAGACTTTGAATTTCAATTTGCATTGTTACTATCTCCAACTCCCAAATTTTAG 591 0.4518 MIIIYSISSSLLLRPIIVVRHNYCSGGLGPLEVETLFWKATIDKPFSVEYANDMPGSAFSWKCREECAAALAESAWNIREISRANGSLLRFMKEEIHGVTSPMVYLAMLFSWFVWHVEDHDLHSLNYLYMGSGKTWYGVPRDAAVAFKDVVKVHGYGSEINPLGEFSSLFAGDNRVFVSLDFEFQFALLLSPTPKF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01589 196 Gene3D Cupin 20 192 - -
Aip02g01589 196 SMART cupin_9 70 191 IPR003347 -
Aip02g01589 196 Pfam JmjC domain, hydroxylase 103 156 IPR003347 -
Aip02g01589 196 ProSiteProfiles JmjC domain profile. 70 196 IPR003347 -
Aip02g01589 196 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 169 - -
Aip02g01589 196 SUPERFAMILY Clavaminate synthase-like 71 156 - -
Aip02g01589 196 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 26 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01589 Aip-Chr2 63147203 63147793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01589 28 59 C2H2 Transcription Factor Family AT5G04240 62.500 5.70e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip02g01589 JmjC 1.8e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01589 - - adu:107478986 275.789