Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01544 ATGGAGCCTTTGGAAATTGATCTTGTGGATATTCCTGATACTCCAGATAGATTAACTACCAGGCCTGGTGATCAGAAACATGTTCGGAATCCTGAGAAGAGGGAGAAGGGCTTCCCTGCTGCTGATGAAATGAAGAAACTCAGCAACTATATAATACTTTCCCCATCAAAGGCACCTTATCCTTCTTATAATGGCCCCTTCTTCAGAAAAACTCAAACTGAGAAAACTTTAGGACTTGGGACAGCACACTCTATTGGTGCTGAAAAGATGGAGAGAGGGAAAACTGTAAGCTCTAGATTTCCTGCTAAGTCATGTCACCATGGACCTAGGTCTGTTTTAGATTTTACTGAAGAGAATGAGAACTCCCAACAGCTGAAACCAGCTTTCTCACATCATGGATCAAGAGATAAGGCTGTTGAAGATAAGAAAGAAACAAGCGCTGGAAACACTTCATCACGAGTTGTTGCTGATTCTTCTACTGCCTTCAGACATAAAATGCTACCAGGTCCTAATATATCTCAGGAGCGTGGCAAGGGAATTGCACTGCCTAATGATTCTCATCCTCCACTAAACACTGAAAAGCAACTGTCTTTGGCCCCTCAAATTTCCACCACACCAAGAGTTAGAGGGCAGAAGAGATTGGTACGACATGGGTGTATTTCACCATATAATATTGCAAATAGAGCAAATCAAACAACTATAAAGGATGATCACCAAACCAAGGAAGTTGAAGAAAGTCATGCTGTGGATTTAGTTTCTACCAATCCAATTTCTACGATTAATGTTGAAGATATAGTTGCTGAAGAGAGAGGCTGTAATAGAGTGAAGGGAAAGCAAGCACTTATTCATCCTTCATCATATGGTCATAACCCTGGAACTGTTGGCATGGCTAGCAGCAGCCCTGCGACTGATTTTGAGGAGGGCCATTCAGCCAGTAATGCTGTAAGGAATTCACTTAAATACTCTGGGGGACAAGATGGTTGGAGAACTACACATACTCATAACAGCATTGATCAGCATCCTTATGATGTGAATGGGCATAATTTACGCAGAAGCCATGATGTTGGAAGATTTATTGCTAGACAAAATATGAACAGAATGGATAGAAGAGACACTCATAGCAGTCAAAGTGGCAAGGATGCACAAGGTTCTTCATCAGATAATGCAGCTCAAGCAACTTCACTGACAATTCGAGAGATAGATCAGTTGACTGTAACTCATCCTGCCACAGGCACACTGAGTAAAAGGCAAAAGAAACGTGGATCAACATCAGGAAATCCTGGGGAATCATCAAGCTCATCCCATAACCCTGTCTTGAATTCTGAAGTAGTCGACTTATCACCAGAACCCAGTTATCCCAACAGATTTACTGAAGGCTTAGATGACAATGACAATGACAAAGCTCGAGCAAGGCAAGTAGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATATTTTTGAAGGGAGAGGGATTGATGAACATTTAGCCTTGGCACTGCAGCAAGAGGAGAATCTTACTCGTACTTCTTTTGATAATCACCAAGCATCAAATCCTATGTTTCCGAGGGCAAATAGTCAGCCTCGTTCACGGACACATCAAAATCCTTCTAATAGGAGGAGAGTTCCACCTCAAGTTCCTTCCTCTAATAGAATGTCACAGTTGAGGTCACAGTTGAGGAGTCACATAGCAAATCGCTCCCGAAGACCAGCCATATCATCCAGAGGACGACGCCCCCGGTTTCCTGTGGATATGGACTTAAACATGAGGCTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTGCAGATTTAGGGATGGGTAATGACATCTTTCTTGCTCAACATGATTTTAATGAACATGATTATGAAATGTTGTTGGCCCTTGATGAGCAAAACCACCGACATACTGGTGCATCCTCCAATCAGATCAATAGTTTGCCGGAGTCCACCATCCAGAATGACAACTTCGCAGAGGCCTGTGCAATATGCCTTGAGACCCCAGGCAAGGGTGAAATTATTCGCCATCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCATAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA 2145 0.427 MEPLEIDLVDIPDTPDRLTTRPGDQKHVRNPEKREKGFPAADEMKKLSNYIILSPSKAPYPSYNGPFFRKTQTEKTLGLGTAHSIGAEKMERGKTVSSRFPAKSCHHGPRSVLDFTEENENSQQLKPAFSHHGSRDKAVEDKKETSAGNTSSRVVADSSTAFRHKMLPGPNISQERGKGIALPNDSHPPLNTEKQLSLAPQISTTPRVRGQKRLVRHGCISPYNIANRANQTTIKDDHQTKEVEESHAVDLVSTNPISTINVEDIVAEERGCNRVKGKQALIHPSSYGHNPGTVGMASSSPATDFEEGHSASNAVRNSLKYSGGQDGWRTTHTHNSIDQHPYDVNGHNLRRSHDVGRFIARQNMNRMDRRDTHSSQSGKDAQGSSSDNAAQATSLTIREIDQLTVTHPATGTLSKRQKKRGSTSGNPGESSSSSHNPVLNSEVVDLSPEPSYPNRFTEGLDDNDNDKARARQVEADERLARELQEQLYHDDIFEGRGIDEHLALALQQEENLTRTSFDNHQASNPMFPRANSQPRSRTHQNPSNRRRVPPQVPSSNRMSQLRSQLRSHIANRSRRPAISSRGRRPRFPVDMDLNMRLDILEALEDAVGDFADLGMGNDIFLAQHDFNEHDYEMLLALDEQNHRHTGASSNQINSLPESTIQNDNFAEACAICLETPGKGEIIRHLPCLHKFHKDCIDPWLHRKTSCPVCKSSIT 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01544 714 MobiDBLite consensus disorder prediction 1 35 - -
Aip02g01544 714 MobiDBLite consensus disorder prediction 362 376 - -
Aip02g01544 714 Pfam Ring finger domain 668 710 IPR001841 -
Aip02g01544 714 MobiDBLite consensus disorder prediction 130 147 - -
Aip02g01544 714 MobiDBLite consensus disorder prediction 517 567 - -
Aip02g01544 714 MobiDBLite consensus disorder prediction 323 342 - -
Aip02g01544 714 Coils Coil 465 485 - -
Aip02g01544 714 MobiDBLite consensus disorder prediction 10 35 - -
Aip02g01544 714 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 468 712 - -
Aip02g01544 714 SUPERFAMILY RING/U-box 668 713 - -
Aip02g01544 714 MobiDBLite consensus disorder prediction 115 129 - -
Aip02g01544 714 CDD RING-H2_PA-TM-RING 669 710 - -
Aip02g01544 714 MobiDBLite consensus disorder prediction 517 585 - -
Aip02g01544 714 SMART ring_2 669 709 IPR001841 -
Aip02g01544 714 MobiDBLite consensus disorder prediction 362 466 - -
Aip02g01544 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 714 IPR013083 -
Aip02g01544 714 MobiDBLite consensus disorder prediction 323 349 - -
Aip02g01544 714 ProSiteProfiles Zinc finger RING-type profile. 669 710 IPR001841 -
Aip02g01544 714 MobiDBLite consensus disorder prediction 88 177 - -
Aip02g01544 714 MobiDBLite consensus disorder prediction 377 441 - -
Aip02g01544 714 PANTHER - 468 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01544 Aip-Chr2 57790946 57800499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01544 1 714 C3H Transcription Factor Family AT1G04790 32.850 1.20e-80 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01544 - - aprc:113872307 825.854