Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01458 ATGGAGGAACATTCAGTAACTGAAGGAAAAGAAGGAGGAGGAGCCTTCCAGAAGGTTCTAACCCCTTCCAAAAGCGACGACGTCGTATCCTTCAACGGCAAGCCTGTCATTGTCGCCCAGCCCCTCACAGTGGTCCGCGCCCTCACTAGCACCCGTGTCCTTGCCCCTCACAACCCTGCCGACTCGCCGAATCAACCCAGAGGAAGCGAAACAACCACCGGAAACAACGCGAATGAGGAAAAGCCGCAAGAACAGGAAGCAGATTCGAAACACGTTTCTTCTGAAATACAAGAAGAAACGCGTTTCGAGGACGACGGAGATTCTACTTCGGAGGTGGTGATGGAAACGCAGATTGTGCAACAAGAGCCCGAAGGCGAAGGTAAACGCTCTATGATGTCATTTGAGGAGTTTCTAAAGGCTACGAACACGAAAGTTGCGTCGGAAGAGGAGGCTATGAAACCAGTTGCTGAGAGCGTTGTTGTTCGCGTCAAGGAGGAACCGGTAGTCGCCGACGATGGCGACCTAGCGATTCTGAGTTTAAATCAAGCGCGTAATGCTGAAGTGAAGAAGGAGAAGGTTGAAGAGAGGATTCCAGGACTCGAGGACGGTGAGTTCGATGTGCCGCAAGGGTGGTTGCTGATGGGAAGAAAGGTGGAGATTGCTCTTTCGATGGCGAAGGGAGTGCGGCGATTGGTAGATAATGAGATCGTTCACTTCGATTTCCCTCGATCTAATTCGTCTCGCAAGTCTCAATCCCTCGTTCGCATCTCAACTAAGCGTTCCGGATTGGTTGGGAGGCTTCCAATGGAGTGGGCGAACACTGTAGTTCCTCTTGTGCAATCTGGGTTTGTTCAGGTTCGAGGGCGATGCATAGGTGTACCACATAGCCTCAAAATGATGCAAGAAATCATGCTGTTAGTGAGCTTTTATATTCACCAATCTGTATTCACAGAATGTGTTGAAAACTCGTGGAGCATAGAAGCTTGTCGCAACCGTAGCTCTACCATCAAGCCACTTCCTCAACTGTTCAAAATGCTAGAGATTAAACCATATCAGAAGGCCTATTTCACCCCTGATGATGTTTCCAAAAAGCGGTCGAGAAATACTGAGGTTGACCCAGGTGAAGCTGTAGCCTTACATATGATCAAGCAAAGAAAGGTGGCTGAATCAGGAAAGGGTGTCCAACAGATTCCGGAGCAGAATGAGAATGAACAATCTCTTTCAGAGTCGGCTTTGAATAAGCTCATTGGAGCTTCAGAAATCTATGACCTGGAGGAGAAGGATGCGCCACGAACACTGACGTGTGTTCTAAAGCCTTACCAGAAACAAGCTCTCTATTGGATGTCAGAGATAGAAAATGGGAATAGGGCCGATAGTGCTGAGAGTAATCTTAATCCTTGCTGGTCTGCCTACAAAATATGTGAGGGAAGAATGATTTATGTGAATATCTTCACTGGAGAAGCAACAACCACAATTCCAAGAGCTACACAGATGGCAAGAGGAGGGATTCTAGCAGATTCAATGGGACTTGGAAAGACGGTCATGACAATTGCTCTGATTCTCACTAACACAGGCAGGGTTAACTCAGAAAATGATAGTCTTATCACTTGTAGGAGGAGGAGCATATATAGGCCTAATGGTGGCACTCTTATTGTTTGTCCGGTGGCATTATTAGGTCAATGGAAGGATGAGCTTGAAACACATTCAAAAGAAGACAGTCTCTCCATATTTGTTCATTATGGTGGGGGTAGAACCACTGATCCTGAGTTGCTTGCAAGGCATGATGTTGTCTTAACAACATATAATGTCCTGTCAGGAGCATATAAAAATGATGGAGAGAATAGTATCTACCACGGGGTCCAGTGGTACAGGGTTGTGCTAGATGAAGCTCATACTATTAAAGCCCATAAAAGCCAGGGTGCCATGGCTGCATTTGCTTTGACCTCACACTGCCGCTGGTGTCTAACTGGAACCCCTCTTCAGAATAGCTTGGAAGACCTATTCAGCCTGTTGTGCTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGAATAAATTGATTCAAAGGCCTTACGAGAACAACGAGCCAACAGCCTTGAAATTGGTAAAGGCCATCTTAAGGACAATGATGTTAAGAAGAACTAAGGAAACTAAGGATAAGCACGGGAGGCCCATTCTTCTCCTGCCACCAGTTGATACTCATTTTGTTGAGTGTGAACAGTCAGAATCTGAACGTGATTTCTATGAAGCCCTCTTCACTAGATCTAAGGTTCAATTTGATCATTATGTTGCACAAGGAAAGGTTTTACACAACTATGCAAATATCCTTGACCTGCTATTGCAATTGAGACGGTGTTGTAACCATCCATTTTTGGTTATGTGCGGTAACTCAGAGAAATATGCAGACTTGAGCAGACTTGCAAGAAAATTCTTGCAATCAAGTGCTGAGTCACTTAACATGTGCAGTAGTCAAAATGATCCACAGAAACAAGCAGAGTTGAATAAACTCGCTAGAAAATTCCTTATCGATACTGATTCTACTTCGAGCTCCATGCAATCTCGTGCATACATTGAGGAGGTCTTGGAGCTTATTCAAAAGGGTGAAATCTTGGAATGCCCTATATGCATGGAGGCACCAGATGATCCTGTGTTTACTCCTTGTGCACATAGGTTCTGTAGAGAATGCCTATTCAGTCACTGGGGGACATCTGAGGGTGGTAAATGTGCAATCTGTCGTCAGCAACTCAGGAAAAGTGATCTCATTATTTGTCCATCTGAAAGCACGTTCAAGGTTGATATTGCAAACAATATGACAGAGTCTTCAAAGGTTTCAAAGCTCTTGGATTACTTGCAAAACATTCAGAAGTCATCCCCTGGTGAAAAAAGTATTGTGTTCAGTCAATGGACATCGTTCTTTGATCTGTTGGAGAATCCACTGAGAAGGAGAGGAATTGATTTTCTGAGATACGATGGCAAATTGACCCAGAAACAGAGGGAGAATGTTCTGAGTGAATTCAATACAAAAGAGATAAGGGTCTTGTTGATGTCATTAAAAGCTGGTGGGGTTGGCTTAAACTTAACTGCAGCCTCAAATGTTTTTATTATGGATCCATGGTGGAATCCAGCAGTTGAGGAACAAGCAATAATGAGAATTTATCGCATTGGACAGAAGCGAAGGGTTGTTGTTAGAAGATTCATTGTCAAGGGCACAGTGGAAGACCGCTTGCAACAATTGCAGGCCAGAAAAGAGAGAATGATAGCGGGTGCCCTTACTGATGATGATGTTCGGACTGCTAGGATTCAAGATCTCAAAATGCTATTCACATGA 3333 0.4479 MEEHSVTEGKEGGGAFQKVLTPSKSDDVVSFNGKPVIVAQPLTVVRALTSTRVLAPHNPADSPNQPRGSETTTGNNANEEKPQEQEADSKHVSSEIQEETRFEDDGDSTSEVVMETQIVQQEPEGEGKRSMMSFEEFLKATNTKVASEEEAMKPVAESVVVRVKEEPVVADDGDLAILSLNQARNAEVKKEKVEERIPGLEDGEFDVPQGWLLMGRKVEIALSMAKGVRRLVDNEIVHFDFPRSNSSRKSQSLVRISTKRSGLVGRLPMEWANTVVPLVQSGFVQVRGRCIGVPHSLKMMQEIMLLVSFYIHQSVFTECVENSWSIEACRNRSSTIKPLPQLFKMLEIKPYQKAYFTPDDVSKKRSRNTEVDPGEAVALHMIKQRKVAESGKGVQQIPEQNENEQSLSESALNKLIGASEIYDLEEKDAPRTLTCVLKPYQKQALYWMSEIENGNRADSAESNLNPCWSAYKICEGRMIYVNIFTGEATTTIPRATQMARGGILADSMGLGKTVMTIALILTNTGRVNSENDSLITCRRRSIYRPNGGTLIVCPVALLGQWKDELETHSKEDSLSIFVHYGGGRTTDPELLARHDVVLTTYNVLSGAYKNDGENSIYHGVQWYRVVLDEAHTIKAHKSQGAMAAFALTSHCRWCLTGTPLQNSLEDLFSLLCFLRVEPWCNWAWWNKLIQRPYENNEPTALKLVKAILRTMMLRRTKETKDKHGRPILLLPPVDTHFVECEQSESERDFYEALFTRSKVQFDHYVAQGKVLHNYANILDLLLQLRRCCNHPFLVMCGNSEKYADLSRLARKFLQSSAESLNMCSSQNDPQKQAELNKLARKFLIDTDSTSSSMQSRAYIEEVLELIQKGEILECPICMEAPDDPVFTPCAHRFCRECLFSHWGTSEGGKCAICRQQLRKSDLIICPSESTFKVDIANNMTESSKVSKLLDYLQNIQKSSPGEKSIVFSQWTSFFDLLENPLRRRGIDFLRYDGKLTQKQRENVLSEFNTKEIRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIYRIGQKRRVVVRRFIVKGTVEDRLQQLQARKERMIAGALTDDDVRTARIQDLKMLFT 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01458 1110 MobiDBLite consensus disorder prediction 55 80 - -
Aip02g01458 1110 CDD DEXDc_SHPRH-like 437 715 - -
Aip02g01458 1110 ProSitePatterns Zinc finger RING-type signature. 889 898 IPR017907 -
Aip02g01458 1110 SUPERFAMILY RING/U-box 870 924 - -
Aip02g01458 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 728 1100 IPR027417 -
Aip02g01458 1110 Gene3D - 731 1110 IPR027417 -
Aip02g01458 1110 MobiDBLite consensus disorder prediction 394 408 - -
Aip02g01458 1110 SMART HIRAN_2 214 311 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aip02g01458 1110 Pfam SNF2-related domain 440 793 IPR000330 GO:0005524|GO:0140658
Aip02g01458 1110 Pfam Zinc finger, C3HC4 type (RING finger) 872 919 - -
Aip02g01458 1110 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 366 1109 - -
Aip02g01458 1110 SMART helicmild6 975 1057 IPR001650 -
Aip02g01458 1110 MobiDBLite consensus disorder prediction 53 110 - -
Aip02g01458 1110 MobiDBLite consensus disorder prediction 389 408 - -
Aip02g01458 1110 SMART ring_2 874 913 IPR001841 -
Aip02g01458 1110 MobiDBLite consensus disorder prediction 1 30 - -
Aip02g01458 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 715 IPR027417 -
Aip02g01458 1110 SMART ultradead3 433 694 IPR014001 -
Aip02g01458 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 867 922 IPR013083 -
Aip02g01458 1110 CDD SF2_C_SNF 939 1059 - -
Aip02g01458 1110 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 947 1106 IPR001650 -
Aip02g01458 1110 MobiDBLite consensus disorder prediction 81 99 - -
Aip02g01458 1110 Pfam Helicase conserved C-terminal domain 946 1057 IPR001650 -
Aip02g01458 1110 Pfam HIRAN domain 222 305 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aip02g01458 1110 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 677 IPR014001 -
Aip02g01458 1110 PANTHER DNA REPAIR PROTEIN RAD5B 366 1109 - -
Aip02g01458 1110 ProSiteProfiles Zinc finger RING-type profile. 874 914 IPR001841 -
Aip02g01458 1110 Gene3D - 487 716 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01458 Aip-Chr2 43599552 43605882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01458 152 1109 RAD5 or RAD16-like Gene Family AT5G43530 59.631 0.0 1166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip02g01458 SNF2_N 2.3e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01458 K15505 - gmx:100806677 1350.11