Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01403 ATGGCAGATCCAGCTAGTTATGGGAATTATGACCGTGATATTGAGCAAGCACTAATTATTTTAAAAAAGGGCAGCCAATTAGTAAAGTATTGTCGAAAAGGGAAGCCAAAAGTTGTTCCATTTAGGCTCTCAGCAGATGAAACAAAGCTGATTTGGCTTTCTCATGGAAAGGAAAAGAGTCTAAAGTTATCTTCTGTTTCACGCATCGTCCCTGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGACTACCTGTCATTTTCACTTATTTACAAAAAAGGGGAACGATCACTTGATTTGATCTGCAAGGACAAAGCTGAGGTGGAGGTATGGTTTGCGGGCCTTAACGCATTAATATCTTCTGGACATAATAGTAAGCGCCCTAGAAGTGAGTTTACAGATGATTGTTCTGACTTTGCTCATAATGAACGTCCTTTTGGAGTGGCATTAGAGTTTGCTTCAACCATCGCCCGTGGCAGGTTTTCTGTGGATTCATCTTCTCATGAGTCTTCATTGGATTCAGCTGGATCAGATGTGGCACCAGAAGCTTCAAATATGCCACTGAGGACAAGTGGAGGAGATGGTTCTTCTCGTATCAGTGTGTCAAGTGTTGGCTGTGCAAGTAGTGTATTGTCCGGACAAGACGACATAGAATCTCTCGGAGATGTCTTCATATGGGGAAGAATTTGGGCACATGGAGCCTCACACGATGGGTTTGGGAGTCAGGTCCTTTCGACAAAGAATGTGCTAACTCCTAAGTCATTAGAGTCTAATATTGTTATTGATGTCCATCAGATCGGGTGTGGTGTACATCACATTGCTCTCATTACAAGGCAAGGAGAGGTGTTTACATGGGGAGATGACTCTGGAGGGAGACTTGGTCATGGGCTTCATAAAAATCGTGGGAGACTGCAACTCGTGGAGTCTTTAGCTGTTACTAGTGTAGGTTTTGTTGCATGTGGTGAATACCATACTTGTGCTCTGTCTACACATGGTGATATATTTACTTGGGGTGATGACATACATAATGCAGGACTTCTTGGGCATGGCACTGAAGTGAGCCATTGGATACCAAAGAAGATTGGAGGACCTTTAGATGGACTTCTCGTTGTATCTGTAGCATGTGGCACATGGCATTCAGCATTGGTTACCTCCATTGGAAAACTGTTTACCTTTGGTGATGGAAAATTCGGTGTCTTGGGCCATGGAGATCGAGATAGTGTATCATATCCGAAGGAGGTGCGCCTAATGTGTGGACAAAGGGCAATCAAAGTTGCATGTGGAGTATGGCACACTGCAGCAATTATAGAGGTTGTTGATCATTGTGGTACAAATGCATCTTCATCTAGGAAGCTTTTCACATGGGGCGATGGCGACCAATATCGTCTTGGCCATGCTAGCAAGGATACCTATCTTCAACCAACTTGTGTCTCTGCACTGAGTGACTATAGTTTTCATCAGGTAGCATGTGGGACCACTATGACTGTTGCCCTCACTGCCTCTGGTCAGGTCTTTACTATGGGAGAAACTAAATATGGTCAACTAGGAAATCCAATGTCCAATGGAAGAACACCAAGTCTGGTCAAAGATAATTTAGTAGGCGAGGTTGTAGAGGAAATATCATGTGGTTCACATCATGTTGCTGTGGTGACTTCAAAAGGTGAACTATATACATGGGGCAGAGGTGCCAATGGAAGATTGGGACATGGAGACACAGATGACCATAACACACCAATTTTGGTTGAAGCTTTTAGAGACAGACACGTAAAGCATGTTTCGTGTGGTTCAAGCTTTACATTTTGTGTATGCATACATAAGTGGATTTCTGGAGCTGACCAATCACTTTGCTCTGGTTGCCGGCAACCATTTGGTTTTACAAGAAAAAGGCATAATTGTTATAATTGTGGATTGGTGTATTGCCATCCTTGTAGCTCCAAAAAGTCAATAAGAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATTCTTGTTATTCCAAGCTTAAAGTTCATGAGACTAGCAGTGCTTCTTCCACTTATAATAAGGATGTTACTCGTGCTCATAGAAAGGAAAGATTTGATACAAGAGAGGCAAAGAATGCGAAAATTCTCTCATCTCGCAGCACCGATCCTGTAAAATACTTTGAGACATTGACGGGTAAGAATATAACTTTGCATGACTTTTCTTCCACAGTCCGAGTTGCTCAAGCTCCTTTGCGTATTCCAATGGATGATGTGTTTCCAAGTTCATCTAGTGTCATGCAGAATGCTTCTGTTCCCATTACACAATCAAGTCAACCTCCAACTCCACCTACACCAAGTAATTTAAGACCTCCATCACCGTATGCAAGGAGACCAAGTCCACCACGTTCTACTTCCCCCGGATTTTCAAGAAGCCTCATTGATAGTTTAAAGAAGACAAATGATCTTTTGAATCAAGAAGTCTCTAAATTAAAAAACCAAAATCAAAATTTGAAGCAGAAGAGTGACATGCAAGATATCAAGATTCGGGAACTTGAGAAAAAGATTGAGGAATCTACCTCATTGATTAAAGAGGAATCATCTAAGCATAGAATACTGAAGGAATATCTCCAGTGCATGACAGATCAGTTGAGGGAAGTGACTGAGAACTTGCCACCAGTTCCTGACTATGAATCTTTAATAACCTTGCATACTCATGCTGAGACATTTCTTAAAGAAAATATGGAATTCAAATCCTTATTTGCATCAACGTTGGAATCAAAGTCACAAAGTGCAAATGATATACATGGCGCAGACAATGACTCTCGTAAACAGCCAGAACAAAAAATGGAAGAAACCGTTGATGCTGCTGAAGCTGGTTCATCTATGAATGGAGGAAATGCTCTTCAAGAAAGCAATGAGTCATCTTTGTTGAGTCCAAATAAGCCAAGATCATCTAATCCTCACAGACCCGGGAATGAGAAACAAGAAGAAATAGTGACCATCGAACAATTTGAACGTGGTGTTTATGTAACATTTGTAGAATTACCTTCTGGTGGAAAAGTTTTTAAACGAATTAGATTCAGTAAGCGCAAATTTGACGAGACTCAAGCAGCAGAATGGTGGAACCAAAACAAAGATAGGGTGCTTATGAAATATAGTCCAGAATCTGTACAGGATGCAGCTACTGGCTCATCTATTAGCCCTACCAGAAGTTGA 3201 0.4167 MADPASYGNYDRDIEQALIILKKGSQLVKYCRKGKPKVVPFRLSADETKLIWLSHGKEKSLKLSSVSRIVPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDKAEVEVWFAGLNALISSGHNSKRPRSEFTDDCSDFAHNERPFGVALEFASTIARGRFSVDSSSHESSLDSAGSDVAPEASNMPLRTSGGDGSSRISVSSVGCASSVLSGQDDIESLGDVFIWGRIWAHGASHDGFGSQVLSTKNVLTPKSLESNIVIDVHQIGCGVHHIALITRQGEVFTWGDDSGGRLGHGLHKNRGRLQLVESLAVTSVGFVACGEYHTCALSTHGDIFTWGDDIHNAGLLGHGTEVSHWIPKKIGGPLDGLLVVSVACGTWHSALVTSIGKLFTFGDGKFGVLGHGDRDSVSYPKEVRLMCGQRAIKVACGVWHTAAIIEVVDHCGTNASSSRKLFTWGDGDQYRLGHASKDTYLQPTCVSALSDYSFHQVACGTTMTVALTASGQVFTMGETKYGQLGNPMSNGRTPSLVKDNLVGEVVEEISCGSHHVAVVTSKGELYTWGRGANGRLGHGDTDDHNTPILVEAFRDRHVKHVSCGSSFTFCVCIHKWISGADQSLCSGCRQPFGFTRKRHNCYNCGLVYCHPCSSKKSIRAALAPTPSKPHRVCDSCYSKLKVHETSSASSTYNKDVTRAHRKERFDTREAKNAKILSSRSTDPVKYFETLTGKNITLHDFSSTVRVAQAPLRIPMDDVFPSSSSVMQNASVPITQSSQPPTPPTPSNLRPPSPYARRPSPPRSTSPGFSRSLIDSLKKTNDLLNQEVSKLKNQNQNLKQKSDMQDIKIRELEKKIEESTSLIKEESSKHRILKEYLQCMTDQLREVTENLPPVPDYESLITLHTHAETFLKENMEFKSLFASTLESKSQSANDIHGADNDSRKQPEQKMEETVDAAEAGSSMNGGNALQESNESSLLSPNKPRSSNPHRPGNEKQEEIVTIEQFERGVYVTFVELPSGGKVFKRIRFSKRKFDETQAAEWWNQNKDRVLMKYSPESVQDAATGSSISPTRS 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01403 1066 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Aip02g01403 1066 Gene3D - 448 622 IPR009091 -
Aip02g01403 1066 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Aip02g01403 1066 CDD FYVE_like_SF 620 672 - -
Aip02g01403 1066 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Aip02g01403 1066 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Aip02g01403 1066 Pfam FYVE zinc finger 610 675 IPR000306 GO:0046872
Aip02g01403 1066 MobiDBLite consensus disorder prediction 771 795 - -
Aip02g01403 1066 Pfam Transcription factor regulating root and shoot growth via Pin3 996 1047 IPR013591 -
Aip02g01403 1066 SMART fyve_4 606 677 IPR000306 GO:0046872
Aip02g01403 1066 MobiDBLite consensus disorder prediction 923 993 - -
Aip02g01403 1066 CDD PH_PLC_plant-like 12 124 - -
Aip02g01403 1066 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1052 - -
Aip02g01403 1066 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1052 - -
Aip02g01403 1066 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Aip02g01403 1066 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Aip02g01403 1066 SUPERFAMILY FYVE/PHD zinc finger 610 684 IPR011011 -
Aip02g01403 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 677 IPR013083 -
Aip02g01403 1066 PRINTS Chromosome condensation regulator RCC1 signature 553 574 IPR000408 -
Aip02g01403 1066 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Aip02g01403 1066 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Aip02g01403 1066 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Aip02g01403 1066 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Aip02g01403 1066 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Aip02g01403 1066 MobiDBLite consensus disorder prediction 931 948 - -
Aip02g01403 1066 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 270 280 IPR000408 -
Aip02g01403 1066 SUPERFAMILY RCC1/BLIP-II 225 611 IPR009091 -
Aip02g01403 1066 SUPERFAMILY PH domain-like 13 123 - -
Aip02g01403 1066 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Aip02g01403 1066 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Aip02g01403 1066 MobiDBLite consensus disorder prediction 172 201 - -
Aip02g01403 1066 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Aip02g01403 1066 Pfam Regulator of chromosome condensation (RCC1) repeat 456 502 IPR000408 -
Aip02g01403 1066 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Aip02g01403 1066 Pfam Regulator of chromosome condensation (RCC1) repeat 336 386 IPR000408 -
Aip02g01403 1066 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Aip02g01403 1066 Pfam Regulator of chromosome condensation (RCC1) repeat 557 606 IPR000408 -
Aip02g01403 1066 Pfam Regulator of chromosome condensation (RCC1) repeat 391 439 IPR000408 -
Aip02g01403 1066 Coils Coil 808 863 - -
Aip02g01403 1066 MobiDBLite consensus disorder prediction 767 806 - -
Aip02g01403 1066 ProSiteProfiles BRX domain profile. 993 1048 IPR013591 -
Aip02g01403 1066 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 377 387 IPR000408 -
Aip02g01403 1066 Gene3D - 168 346 IPR009091 -
Aip02g01403 1066 Gene3D - 347 447 IPR009091 -
Aip02g01403 1066 Gene3D - 13 132 IPR011993 -
Aip02g01403 1066 MobiDBLite consensus disorder prediction 957 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01403 Aip-Chr2 37855320 37862784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01403 996 1048 Major Intrinsic Protein MIP AT1G31880 47.170 1.42e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01403 - - gmx:100812689 1325.84