Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01398 ATGCCGACGCTCGCTGATTTCCGCTTCTTCAGATTCATAATCCCCAACACGGAGAATCAATTTATAAGTTTTCAGTTTTTTTTGTTCTACTACCCTATCCCCAAGGCCCGCATGCAAGCCCACATCAATATCGATTTCTTACTCGTGCAGAGAATGCCGGCGCACTTCACCAACGTTGTCCAGGAAAACATGAGCAACGCCGTCGAGGTAAGCACCACAAATGGTCAGTCATGGAGCATCTCGTGGGTTGTCGAGGAGGAGCATCCGCATCGAATCATCTTCACCGGAGGGTGGCGAGCCTTTTACGAACACTACCATCTTCAAATCGGTAACACAATGCTATTTTCGTATCACCAACCAAAGTTTTTCTATGTGGTCATCCATGACACAAGATACTACGAGATCAACTATGGAAGAAACTTGCGAAACAGAAGTCTTCCAGCAATACCCGCACATGGCAACTATACAGTCCAGTTCTTCACGATAATCCTGGTGAACGACCCTGATACACTGGTATAG 519 0.4644 MPTLADFRFFRFIIPNTENQFISFQFFLFYYPIPKARMQAHINIDFLLVQRMPAHFTNVVQENMSNAVEVSTTNGQSWSISWVVEEEHPHRIIFTGGWRAFYEHYHLQIGNTMLFSYHQPKFFYVVIHDTRYYEINYGRNLRNRSLPAIPAHGNYTVQFFTIILVNDPDTLV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01398 172 PANTHER B3 DOMAIN-CONTAINING 29 138 - -
Aip02g01398 172 SUPERFAMILY DNA-binding pseudobarrel domain 50 137 IPR015300 -
Aip02g01398 172 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 29 138 - -
Aip02g01398 172 ProSiteProfiles B3 DNA-binding domain profile. 52 131 IPR003340 GO:0003677
Aip02g01398 172 Gene3D - 5 132 IPR015300 -
Aip02g01398 172 Pfam B3 DNA binding domain 52 129 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01398 Aip-Chr2 37639005 37639601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01398 51 137 B3 DNA Binding Superfamily AT3G18990 28.736 1.01e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip02g01398 B3 5.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01398 - K09287 adu:107492861 235.343