LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g01396	ATGGCGCACCGCTTGCTGAGGGACCATGAAGCTGACGGGTGGGAGCGCGCAGACTTCCCTATCATCTGCGAGTCCTGCCTTGGCGACAACCCTTACGTTCGAATGACAAGAGCTGAGTATGACAAGGAATGCAAGATTTGTACACGGCCATTTACTGTTTTCAGATGGAGACCTGGTCGGGATGCGAGGTATAAAAAGACTGAGATCTGCCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGTGTGTCTTCTGGATCTAGAATACGGGCTGCCAGTTCAAGTCCGTGACACAGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAAAGTGATGTCAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAAGGCTAGAGCTGGTATAGATTACGAATCTTCTTATGGTAAAGCACGCCCAAATGATACTATCTTGAAGCTACAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAATGCCCTTATCGGCATGAGATGCCAGTAACTGGGGAGCTGTCTCAACAAAATATTAAAGATCGTTATTATGGTGTCAATGATCCTGTGGCTTTGAAGCTACTTGGCAAGGCTGGAGAGATGACGTCTCTGGAGGCTCCCGAGGATGAGAGCATCAAAACCCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCGCATGGTGAAATTGAATCTATAAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCCGAAGAACTATCCAACAAGCTGGTTATTAAAGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAGCAAAACCGGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAAGCAGCTGTGGCTCACAGTGGGTTGTTGCCTCGTGCAGTTATATCGCAACAGCAGAACCAGGATCTAGGCCAAGGAATGCCTTACTATAACAATCCACCTCCTCCTCAGCAAGAAAGAAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGAGGGTCCTCCTGGTGGACCTAGTGGATCAGGTGAGAACAAACCCAGTACGGAGAAGCCACAAATGCAACAACATTATACCCATCCAATGATGCCTCCTCCTCCTCCTGGCCAATATCATCATCAGCCTCCTCATCAGTATTATCCTCCTCCATATGGTTATATGCCACCAGTTCCCCCCTATCAGCAGTATCCACCACCATATAGTTCTCAAATGGTGCCATCTCAGCCACCAGCTGCAAATCATCCATATCACCATCATCCGATGCAGCCAGGTTCTTCACAAACAGGATCTGGACAGGTTGGCTCTGGATCTGCACCAGCTGAAGCTGGAACATCAGCATCAGGGTCACAGCAGCACCCATTCAAAATGACCGGAATGATAACTGCAACATGCAACAAGAAAAAAGGGCCCTACTATTATTCCCTCCTGATTTTAGACGAGAACATGCACGCAAGAAGCCTATCCTTAACAATGCCTACAAACAAAAGGTATATGCTTTGGTGGACTTCAGGTTACCATCTTTCTGTTACTACTGTAGTCGCCGTCACAGCTCGTCCCATCGTTGTAGTCGGTCGGCCTCGTCACATTCACCGTCGCTCACCAAGACACCAACCCTCCTCATTCACCTCGGTCACTTCGCCGCTGTCCCTCACGGAGCTCACGCCGGCGTCACTCCCACTTCTCGCCGTCACTGTCCTCGCCGACTCGCCTCTCCGATCTGCGGTCTTTGGTCTCTGCTCACCTTGTCGTCCCTCCTTCCTCCGTCGTCGTCTCTCTGGTGACTGgtttaaatcttga	1923	0.4852	MAHRLLRDHEADGWERADFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESDGSDQARQQAAVAHSGLLPRAVISQQQNQDLGQGMPYYNNPPPPQQERSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPSTEKPQMQQHYTHPMMPPPPPGQYHHQPPHQYYPPPYGYMPPVPPYQQYPPPYSSQMVPSQPPAANHPYHHHPMQPGSSQTGSGQVGSGSAPAEAGTSASGSQQHPFKMTGMITATCNKKKGPYYYSLLILDENMHARSLSLTMPTNKRYMLWWTSGYHLSVTTVVAVTARPIVVVGRPRHIHRRSPRHQPSSFTSVTSPLSLTELTPASLPLLAVTVLADSPLRSAVFGLCSPCRPSFLRRRLSGDWFKS	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g01396	640	MobiDBLite	consensus disorder prediction	339	425	-	-
	Aip02g01396	640	SUPERFAMILY	CCCH zinc finger	159	182	IPR036855	GO:0046872
	Aip02g01396	640	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	1	466	IPR039171	GO:0003723
	Aip02g01396	640	MobiDBLite	consensus disorder prediction	437	494	-	-
	Aip02g01396	640	Gene3D	-	212	309	IPR012677	-
	Aip02g01396	640	SUPERFAMILY	RNA-binding domain, RBD	221	309	IPR035979	GO:0003676
	Aip02g01396	640	MobiDBLite	consensus disorder prediction	301	321	-	-
	Aip02g01396	640	ProSiteProfiles	Zinc finger C3H1-type profile.	157	184	IPR000571	GO:0046872
	Aip02g01396	640	SMART	rrm1_1	229	297	IPR000504	GO:0003723
	Aip02g01396	640	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE	1	466	-	-
	Aip02g01396	640	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	288	IPR000504	GO:0003723
	Aip02g01396	640	Gene3D	-	149	208	-	-
	Aip02g01396	640	MobiDBLite	consensus disorder prediction	401	425	-	-
	Aip02g01396	640	Pfam	Torus domain	138	194	IPR032297	-
	Aip02g01396	640	MobiDBLite	consensus disorder prediction	462	494	-	-
	Aip02g01396	640	CDD	RRM_RBM22	227	300	-	-
	Aip02g01396	640	MobiDBLite	consensus disorder prediction	384	398	-	-
	Aip02g01396	640	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	301	IPR000504	GO:0003723
	Aip02g01396	640	SMART	c3hfinal6	157	183	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g01396	Aip-Chr2	37610876	37617330	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g01396	215	289	Eukaryotic Initiation Factors Gene Family	AT1G49760	33.750	1.14e-06	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g01396	K12872		-	gmx:100779917	759.214