Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01331 ATGGGTAACTCTCACTCACATCGCAAACACCGTAACTCCCTCTCTCAAAACAATAACTCTTCTTCTTCTTCTGTTGCTACTCCTCCACACTATAAATATGGTGCTCATCATTATCCACAACAACAACACAATAATAGGACGATGGTGAGGAATAAGGTTTCTTTGCCTTACGGGCGCGTGGACACCACGCTCCGAGAACTCGCTGCAAAGGCCGAAGGCTTTGGACGCTTCGCCATCGGCGGCCTCCACGGTCCGCTATACCGTGTCACTAGTCTTGCAGATGATGGACCAGGATCACTACGCGATGCATGTCGTAGAAAAGAACCATTATGGATTGTATTTGAGGTTTCAGGCACAATTCATCTGTCATCATATTTGAATGTATCATCTTACAAGACCATTGACGGCCGGGGCCAGAGGATTAAACTCACCGGTAAAGGATTGCGGCTCAAGGAATGCGAGCATGTAATAGTGTGCAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGTTGATGCCATTCAAATCAAGCCTAACTCAAAGCACATATGGATAGATCGTTGTACTCTCTGTGATTTCGAAGATGGGCTGATAGACATCACCAGAGAAAGCACAGATATTACAATTTCAAGGTGTCATTTTTCTAAGCATGACAAAACAATTCTCATTGGAGCAGATCCCTCACATGTTGGTGATAGATGCATAAGGGTCACCATTCATCATTGCTTCTTCGATGGGACTCGACAGAGGCATCCTCGCGTTCGATTTGCAAAAGTTCATCTGTATAACAATTATACCAGAAACTGGGGCATATATGCTGCTTGTGCAAGTGTGGAGTCCCAGATATTCTCGCAACATAATATTTATGAAGCAGGGCAAAAGAAGGTAGCATTCAAGTACCTTTCTGAGAAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGCCGCATAATATCCGAAGGAGATTTGTTTATAAATGGAGCACAATCAGGGCTAATAGCATCTAACAATCTTGAATGTAACAATTTTCATCCTAGGGAACACTATCTGGCATGGACGGTGGAACCTCCTTCAGATGATCTAAAACAGGTTCTTCAGCATTGCACTGGATGGCAATCTATGGCGAGGCCATTAGACCAAACGGTTGAACACGGTGCACATGATGAAGCAGTACCTATTTATCCATTCCAAACTCACAGCATTGTAGCCAGTTTGCCTTATGCACGAGTGGACTCCTCCCTCCGAGCACTTGCTGGCTCGGCCGAGGGATTTGGACACTTTGCCATTGGTGGCCTCCGTGGTCCCCTTTATCATGTAACAACTCTAGCAGATGATGGACCAGGGTCGCTGCGTGATGCATGTCGCAGAAAAGATCCTTTGTGGATTGTATTTCAAGTTTCAGGCACAATTCATCTGTCTACATTTTTGAGTGTATCATCTTATAAGACCATCGATGGCCGGGGCCGAAGGATTAAACTCACCGGAAAAGGATTGCGGCTGAAGGAATGTGAGCATGTAATAGTTTGTAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATAGTGATGCCATTCAGATCAAGCCTAATTCGAAGCACATATGGATAGATCGTTGTAGCCTCAGTGATTTCGACGATGGACTCATAGACATCACTAGAGAAAGCACGGATATTACCATTTCAAGGTGTCATTTTTCTAAGCACAACAAAACAATTCTCATCGGAGCAGATCCCTCGCATGTTGGGGATAGGTGCATAAGGGTCACCATTCACCACTGCTTTTTCGATGAGACTCGACAGAGGCATCCTCGTGTTAGATTTGCAAAAGTACATATTTACAATAATTATAGCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTGGAATCACAGGGCAGAAGAAGGTGGCATTTAAGTATCTTTCTGAAAAGGCAGCAGACAAGGGAGAAGAAGCAAGTGGCCGCATAA 1965 0.4478 MGNSHSHRKHRNSLSQNNNSSSSSVATPPHYKYGAHHYPQQQHNNRTMVRNKVSLPYGRVDTTLRELAAKAEGFGRFAIGGLHGPLYRVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDAIQIKPNSKHIWIDRCTLCDFEDGLIDITRESTDITISRCHFSKHDKTILIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAACASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGAEASGRIISEGDLFINGAQSGLIASNNLECNNFHPREHYLAWTVEPPSDDLKQVLQHCTGWQSMARPLDQTVEHGAHDEAVPIYPFQTHSIVASLPYARVDSSLRALAGSAEGFGHFAIGGLRGPLYHVTTLADDGPGSLRDACRRKDPLWIVFQVSGTIHLSTFLSVSSYKTIDGRGRRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDSDAIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSKHNKTILIGADPSHVGDRCIRVTIHHCFFDETRQRHPRVRFAKVHIYNNYSRNWGIYAVCASVESQGRRRWHLSIFLKRQQTREKKQVAA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01331 654 Pfam Pectate lyase 125 288 IPR002022 -
Aip02g01331 654 Pfam Pectate lyase 475 616 IPR002022 -
Aip02g01331 654 PANTHER PECTATE LYASE 18-RELATED 50 376 IPR045032 GO:0030570
Aip02g01331 654 Gene3D - 57 354 IPR012334 -
Aip02g01331 654 Gene3D - 406 644 IPR012334 -
Aip02g01331 654 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Aip02g01331 654 PRINTS Pollen allergen Amb family signature 70 87 IPR018082 -
Aip02g01331 654 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Aip02g01331 654 SUPERFAMILY Pectin lyase-like 417 630 IPR011050 -
Aip02g01331 654 SMART pbh1 605 627 IPR006626 -
Aip02g01331 654 SMART pbh1 529 550 IPR006626 -
Aip02g01331 654 SMART pbh1 153 178 IPR006626 -
Aip02g01331 654 SMART pbh1 204 225 IPR006626 -
Aip02g01331 654 SMART pbh1 553 574 IPR006626 -
Aip02g01331 654 SMART pbh1 502 527 IPR006626 -
Aip02g01331 654 MobiDBLite consensus disorder prediction 13 28 - -
Aip02g01331 654 MobiDBLite consensus disorder prediction 1 43 - -
Aip02g01331 654 PANTHER PECTATE LYASE 400 630 - -
Aip02g01331 654 PANTHER PECTATE LYASE 50 376 - -
Aip02g01331 654 SMART amb_all 97 295 IPR002022 -
Aip02g01331 654 SMART amb_all 446 642 IPR002022 -
Aip02g01331 654 SUPERFAMILY Pectin lyase-like 69 376 IPR011050 -
Aip02g01331 654 PANTHER PECTATE LYASE 18-RELATED 400 630 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01331 Aip-Chr2 31138113 31144552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01331 405 630 Polysaccharide Lyase AT3G09540 76.549 7.65e-126 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01331 K01728 - ecad:122607709 922.924