Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip02g01300 | ATGACAGTTATCAAGAGAGAAAGAGAAACAAACAATGGAAAAGAGAGCATAGATTATTTGGCAAATACCCTAATGTTGCTCTCAAGTGCCATAGAATTGAAGAGTAGTGAGAAATTCGAGTGCAAGACATGTGGCCGCAAGTTCGCATCTTTTCAAGCACTTGGTGGGCACAGAACCAGTCACAAGAGACAAAAGCATAATGGTGATCATGGTGATGAGCAACAACTCAAATCAGAGGCCAAGAAACCCAAGAAGATGCACGAGTGTTCAATCTGTGGAATGGGATTCTCTTTGGGGCAGCAATTAGGTGGCCACATGAGAAAGCACAGAGAGAATAATAATAAAGGGTTTTCTTCTAATCCTATAAACCATGCTGTTGTCAAAGTTCCGGTTTTGAAGAGATCAAATAGCAAGAGGGTTATGTGTATGGACTTGAACTTGACGCCATTGGAGAATGATCTCAAGTTGTTGTTTGGAAACAAGGCACCACGAGTTGATCTTTCTTTCTTGTGA | 513 | 0.4113 | MTVIKRERETNNGKESIDYLANTLMLLSSAIELKSSEKFECKTCGRKFASFQALGGHRTSHKRQKHNGDHGDEQQLKSEAKKPKKMHECSICGMGFSLGQQLGGHMRKHRENNNKGFSSNPINHAVVKVPVLKRSNSKRVMCMDLNLTPLENDLKLLFGNKAPRVDLSFL | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip02g01300 | 170 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 89 | 109 | IPR013087 | - | |
Aip02g01300 | 170 | MobiDBLite | consensus disorder prediction | 54 | 81 | - | - | |
Aip02g01300 | 170 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 87 | 114 | IPR013087 | - | |
Aip02g01300 | 170 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 39 | 66 | IPR013087 | - | |
Aip02g01300 | 170 | MobiDBLite | consensus disorder prediction | 65 | 81 | - | - | |
Aip02g01300 | 170 | SUPERFAMILY | beta-beta-alpha zinc fingers | 38 | 109 | IPR036236 | - | |
Aip02g01300 | 170 | Gene3D | Classic Zinc Finger | 36 | 109 | - | - | |
Aip02g01300 | 170 | SMART | c2h2final6 | 87 | 109 | IPR013087 | - | |
Aip02g01300 | 170 | SMART | c2h2final6 | 39 | 61 | IPR013087 | - | |
Aip02g01300 | 170 | Pfam | C2H2-type zinc finger | 87 | 111 | - | - | |
Aip02g01300 | 170 | Pfam | C2H2-type zinc finger | 39 | 64 | - | - | |
Aip02g01300 | 170 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 4 | 164 | - | - | |
Aip02g01300 | 170 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 41 | 61 | IPR013087 | - | |
Aip02g01300 | 170 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 4 | 164 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip02g01300 | Aip-Chr2 | 29381593 | 29382382 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip02g01300 | 4 | 170 | C2H2 Transcription Factor Family | AT2G37430 | 41.989 | 1.59e-39 | 130 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Aip02g01300 | zf-C2H2_6 | 5.2e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip02g01300 | - | - | gmx:100526874 | 202.601 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip06g01559 | 06 | 28052428 | 28052997 | Aip02g01300 | 02 | 29381593 | 29382382 | PCT |