Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01282 ATGGGTTCTATGCTCGACACGTGTAGCAGTTTCTTGAATGACAAGTGGCATGCAGGGGTGTGGACAACTCCAAACAAGTTCAATGTCAGCGAGATTGGCTCCATCGAAATGGTTCTTCAAGATAAACAGGGTGGCAGGATTTATACAACCATACCAAGATCACTAGCAAAGAAATACATTAGTATTATTCATGAGTTCCACATGTATACTATGAGTAACTTCATAATTGTTGACAACATAACCAAGAAAAAAAACGGTGTTAGTAGGTGGGTACTTGTGTTTTCACATAGAACAAGGGTTGAACATATAGAGAATCCAACTTTTTCTTTGGAAGCATTTCGATTTAGGAACCTTGCAGAGATGCATACAGTCGAGAAAGTAGAGGATCTTGAACTGTTTGATATAATTGGAGAAGTTGTTGGAAAGGAAGATCCAAGAGAATTAATAACTAGCAAGGGAATAGAGACTAAGCGCTTGGTTGTTATTGTGGAAGACTTGGAGAAGAACAGGTTAAGTTGTACTCTCTTTGGCGAAACTGTTGACCAGATACTCCCTCACCTTGATGATGATCAACTTGAACCGCTTATTGTGATCCTCCAATATTTTAAAGCAACCAGATGGAATGGCAAAACTTTAGTGCAGAGCCACTTTGAACTGTCCAAGGTCCATGTCAACCCAGAACTAAAAGAAGTTATGTCATTCAAAAAAAGCCTACTCAGCGGTTCTGAGTCAACTTCAATGAGGATTAGCCATCAGTCGACCCAAAGTTCATGGGTTGGGACTGATGAGCTCAACAATGGCACAGCTATTGTGAAAACGATTGAAGAAGTTTTTAAGCGATGTCCAAAAAAGGTGGAAACTCCTATTGGGAATAGGTACGAATGTGCAAAGTGTGGCCACACCCATGGATGTGCAGCACTCAGATACAAGGTTGAGGTCATGGTCTTTGATGGTACCGGAAGCATTACATTGTTATTGTGGGACAGAGAAACCAACCAGTTGTGTGGAAAGGCAGCTGAAAAAATTGTAGAGGAGGATGATGCTAAAGAGGATGAATACCCTAAAAGTCTAGACAACATGATGGATAGAATAGTTCTTTTCAAAATCAATGTGAAAAGTGGCAACATAAAACACTATGATCAGATTTACACAGTCATGAAAGTGTGTGATGATGAAGAAACAGTTGCAAAGAACAAGCCTAAGCAAATGGACGTTAGCACATCTATGAACATCATTATACGTGAGAATAGAGGTAGCAACACGCTGGAGATGTCCGGACATGTTGTTAATCTTAAGAATGATAATGATCCTCAGCTTACTGTGGATTCTATGGAAGACTGTGTTGAAAGCCTCAAATACAAAATACCAGCTAAAAGAATTGCCGACAGTTTGAAGTGTAGGGCACTCAACAAGTCTTGGAATTTCAGGCTTAACACACCATACTTTGTGAAGCAGAACTGGGCTGAACAAAGGGGTCAAAACATCAATGTCATTATTGGTGTTGGAAACCCTCCAGCAGACGAAAATTCTCAATGGTTCATTCGTGCTGGTGTAAATGATGGAGTGCACTCGCAGCTAAACCTTCCAATTGTGATCAACCAGCTTGGTTTTTACTCACTTATTGGCTCAGACCATGGAGTTCTTTGTATAAAATTATCCCAAGGAGGACTTAACTCAAGGCTACTCATATGGAATCCACTCACTGGAATGATGAAATATGTATTTGATGAGTCCAAAAAACACTACCGTCATCATGTTGTAGTTTATGCATTTGGGTATTTGTATGATTCAGTGGAGTATCGAATTGTGCATGTCTTTAAGCGCCATTACATACATAGGACCTTGGGCTGGAGTCTATACTGTTCATTTGAGAATAACTGGACAAGCTTAATTGGGATAAGAGTTACAGGACTTGGCATTCTTTACAACCCATCTATGTTCATCGGAAAGGATATCATTTCCATCATGGAGTGTAGGAATCGTTTTGGGGGATCCAATGGTGCTGATAGGACAGATCTTTTGCTTTCAAGACTTAAGTGGAGCGGAGCTAGGAGGGAGCACCTGATGCACCGTACTTGGCAACAAAATGTACACGTCAAGTCCATGACCATGCACTCTGAAAGTCTCTATATTGTGTAA 2139 0.4044 MGSMLDTCSSFLNDKWHAGVWTTPNKFNVSEIGSIEMVLQDKQGGRIYTTIPRSLAKKYISIIHEFHMYTMSNFIIVDNITKKKNGVSRWVLVFSHRTRVEHIENPTFSLEAFRFRNLAEMHTVEKVEDLELFDIIGEVVGKEDPRELITSKGIETKRLVVIVEDLEKNRLSCTLFGETVDQILPHLDDDQLEPLIVILQYFKATRWNGKTLVQSHFELSKVHVNPELKEVMSFKKSLLSGSESTSMRISHQSTQSSWVGTDELNNGTAIVKTIEEVFKRCPKKVETPIGNRYECAKCGHTHGCAALRYKVEVMVFDGTGSITLLLWDRETNQLCGKAAEKIVEEDDAKEDEYPKSLDNMMDRIVLFKINVKSGNIKHYDQIYTVMKVCDDEETVAKNKPKQMDVSTSMNIIIRENRGSNTLEMSGHVVNLKNDNDPQLTVDSMEDCVESLKYKIPAKRIADSLKCRALNKSWNFRLNTPYFVKQNWAEQRGQNINVIIGVGNPPADENSQWFIRAGVNDGVHSQLNLPIVINQLGFYSLIGSDHGVLCIKLSQGGLNSRLLIWNPLTGMMKYVFDESKKHYRHHVVVYAFGYLYDSVEYRIVHVFKRHYIHRTLGWSLYCSFENNWTSLIGIRVTGLGILYNPSMFIGKDIISIMECRNRFGGSNGADRTDLLLSRLKWSGARREHLMHRTWQQNVHVKSMTMHSESLYIV 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01282 712 Pfam Domain of unknown function DUF223 36 105 IPR003871 -
Aip02g01282 712 Pfam Replication factor-A C terminal domain 280 388 IPR013955 -
Aip02g01282 712 Gene3D - 110 248 IPR012340 -
Aip02g01282 712 SUPERFAMILY Nucleic acid-binding proteins 127 238 IPR012340 -
Aip02g01282 712 CDD RPA1_DBD_B_like 134 238 - -
Aip02g01282 712 Gene3D - 249 399 IPR012340 -
Aip02g01282 712 PANTHER BNAC07G49340D PROTEIN 133 434 - -
Aip02g01282 712 Gene3D - 13 105 IPR012340 -
Aip02g01282 712 PANTHER REPLICATION FACTOR A 1, RFA1 133 434 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip02g01282 712 CDD RPA1_DBD_C 279 388 IPR013955 -
Aip02g01282 712 SUPERFAMILY Nucleic acid-binding proteins 280 390 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01282 Aip-Chr2 28412184 28421491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01282 39 342 Core DNA Replication Machinery Family AT2G06510 19.355 3.81e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01282 - - adu:107477039 511.146