Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01263 ATGTTTATCATGTTCTTGGCTGGTGATCACTTGGTTACCTTGAAAGGGGAGCGAAAACAAATTCCAGATCCAACTTCATTACATCAGTTTAAATGGCTTCAAGCAGTAGATGGTATAGCTGCTTTGTTTATATTGCAGGTTAGACAACTTCTGGTGGAAGAAGCTGCAAGGTTGTCTAAGTGCTCCTTCGGCCAGCGGAGTATCGATTATCTTGGTCGTATGATCTCCGGCGATGGGGTCCGGGTGGATGATGCTAAGTCTGATTTGGTAGAGGAGGCTTTTAATACGTTGAAGAATGCTTTAATGAATGCTCCTGTCTTGGCTTTACCAGATTTCTCTAAACCATTTGTCCTGGAAACAGACGTGTTAGGATTCAGTTTTGGAGCTATTTTGAGTCAAGATAACCACCTGATTGCATACTTCTCGAAAAAACTTTCATTACCTATGCAGAAATATTCCACTTATGCTAGAGAAATGCAAGCGATACTCACAGTAGCTTCAAAATTCCGGCATTATTTACTGGCTCATTATTTTGTCATTCGAACGGATCATCAAAGCTTGAAAGAAATGCAGAACCAAGTGATCCAAACCCCGTTGCAGCAAGCTTGGCTTCCGAAGTTGCTTGGGCTTCTCTCCGATCATTTTACACCAGCTTCTGAGTTCTTGGTGACTAAACTGGAGTCTAACAGATTGCAGCAGCAGAATGGACTGTGGTATTGGGATGGCAGGCTGGTGGTGCTAAGGGATTCATCCTTTATACCAACCATTTTAGCTGAATTTCATGATTCCAAAGTGGGTGGTTATCTCACAGATGGCAATCCTGTGATACTGGAGCCTCAGCAAGCGTTAGGTCACCGCACGATCAAAAAAGACAATAGATGGCAGGAGAAGGTTTTAATTCAGTGGGACTCATTGGCAGCAGAAGAAGCCACTTGGAAACTATATGAGCAGATGAAGCAGCAATTTTCTTCCTTTGACCTTGAGGGCAAAGTCCCTTTTAAAAGTGGGGCTGAGATTTACATCGTAACTGTTGAAAGTGAACCTGTTATTAGTTACGGAGGTGGAATTGATGATTTTGAAGTTACTGTTGTTGAATCTGATGAGAAGATTAATACCAATAGAAGTCACCCTTTCAGTAGAGAAGAAAACCCTCAAAGTCCAAAACACAAAGAAAACCCTTTCAGAAAACCCTGCCTCCTGCACCGCGCGAAGATCGTGAAGCCTCACTGTCGCAAAGATCATCACACCCCAGTCCCCACTCACCACTTAGCGCCACACCGTTGTGAAGATCGTGAAGCTCTCACCGTCGTGAACCCTCCTGCACTGATCGTCGTGCGCTGCCCATATCATCGTCGATCTCTGCACTTCTCATCGTCCTCTTTGTGCTTACATCGTCGATTAGCCCTAGCTTGGCAAGTCCATCTACGCAGAAATTCTCCTCTCTCCCAGTCTCTAGCTAAGAGGTCGCGAGATTCATCAATAAGAAGTCCATTGGACTCAAGCTCTCTATCCGCCGAGTTGCTGATGCCCGAGGGGCTACTACGCTCGCCGCGCACTTGCATCACCACCTGA 1572 0.4517 MFIMFLAGDHLVTLKGERKQIPDPTSLHQFKWLQAVDGIAALFILQVRQLLVEEAARLSKCSFGQRSIDYLGRMISGDGVRVDDAKSDLVEEAFNTLKNALMNAPVLALPDFSKPFVLETDVLGFSFGAILSQDNHLIAYFSKKLSLPMQKYSTYAREMQAILTVASKFRHYLLAHYFVIRTDHQSLKEMQNQVIQTPLQQAWLPKLLGLLSDHFTPASEFLVTKLESNRLQQQNGLWYWDGRLVVLRDSSFIPTILAEFHDSKVGGYLTDGNPVILEPQQALGHRTIKKDNRWQEKVLIQWDSLAAEEATWKLYEQMKQQFSSFDLEGKVPFKSGAEIYIVTVESEPVISYGGGIDDFEVTVVESDEKINTNRSHPFSREENPQSPKHKENPFRKPCLLHRAKIVKPHCRKDHHTPVPTHHLAPHRCEDREALTVVNPPALIVVRCPYHRRSLHFSSSSLCLHRRLALAWQVHLRRNSPLSQSLAKRSRDSSIRSPLDSSSLSAELLMPEGLLRSPRTCITT 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01263 523 MobiDBLite consensus disorder prediction 370 394 - -
Aip02g01263 523 Pfam RNase H-like domain found in reverse transcriptase 91 180 IPR041577 -
Aip02g01263 523 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 91 207 - -
Aip02g01263 523 Gene3D - 111 181 - -
Aip02g01263 523 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN 91 207 - -
Aip02g01263 523 SUPERFAMILY DNA/RNA polymerases 56 209 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01263 Aip-Chr2 27280791 27290194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01263 337 373 Subtilisin-like Serine Gene Family AT4G30020 70.270 5.37e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01263 - - ahf:112763082 187.193