Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01235 ATGAGTTCTTGTTATTGCCAAAAAACTATATGCATTTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAATTATATGGCAACAGATGGACAGAAATAGCGAAAGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAATCGCTTCTCTATGCTCTGCAGAAAGAGGCAAAAATATGAAGCTTTAGCTAAAGAGAACAGCATTTCATCACACATCAATTCAAATAACAAGAAAATTGTTTTCCAACATGCTTATAATACAGATGCAACATCAGAATCTGCTATATCTATCAAGAAAATGAGGAGGGCTCATATCACAGATGATGGAGGGAAGATCAAGTTTGGAGATAGATCACATTTGCGAAATGGAACTTCGATAAATCAGCATCCAAGGACACCGTTCGCATTATTAGCTCAAAACTCATAA 528 0.3712 MSSCYCQKTICIWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKLYGNRWTEIAKVVSGRTDNAVKNRFSMLCRKRQKYEALAKENSISSHINSNNKKIVFQHAYNTDATSESAISIKKMRRAHITDDGGKIKFGDRSHLRNGTSINQHPRTPFALLAQNS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01235 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 91 IPR017930 -
Aip02g01235 175 Gene3D - 5 41 - -
Aip02g01235 175 SMART sant 4 38 IPR001005 -
Aip02g01235 175 SMART sant 41 89 IPR001005 -
Aip02g01235 175 Gene3D - 44 119 - -
Aip02g01235 175 ProSiteProfiles Myb-like domain profile. 13 36 IPR001005 -
Aip02g01235 175 ProSiteProfiles Myb-like domain profile. 37 87 IPR001005 -
Aip02g01235 175 PANTHER MYB PROTEIN-RELATED 11 125 - -
Aip02g01235 175 SUPERFAMILY Homeodomain-like 15 95 IPR009057 -
Aip02g01235 175 CDD SANT 13 36 IPR001005 -
Aip02g01235 175 Pfam Myb-like DNA-binding domain 42 84 IPR001005 -
Aip02g01235 175 CDD SANT 45 83 IPR001005 -
Aip02g01235 175 PANTHER BNAC02G34810D PROTEIN 11 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01235 Aip-Chr2 26490101 26491119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01235 13 175 MYB Transcription Factor Family AT2G02820 64.242 4.85e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip02g01235 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01235 K09422 - gmx:100803361 266.929