Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01229 ATGAAGAAACAGGAAGAACAGTGTAACAGAGAATCTAAGAAGGGTCACATTGTAACTTGGACTCAAGAGGAAGATGATATACTGAGAGAGCAGATTGGTATCCATGGAACTGAAAATTGGGAAATTATTGCTTCTAAATTCAAGGACAAAATGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAATTATATGGCAACAGATGGACAGAAATAGGGAAAGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAATCGCTTCTCTATGCTCTGCAGAAAGAGGCAAAAATATGAAGCTTTAGCTAAAGAGAACAGCATTTCATCACACATCAATTCAAATAACAAGAAAATTGTTTTCCAACATGCTTATAATACAGATGCAACATCAGAATCTGCTATATCTATCAAGAAAACGAGGAGGGCTCATATCACGGATGATGGAGGGAAGATCAAGTTTGGAGATAGATCACATTTGCAAAATGGAACTTTGATAAATCAGCATCCAAGGACACCATTCGCAGTATTAGCTCAAAACTCACAAAACATAAACAATTTGCTAGACGAGCTTCAAATTTGCAATGCCAAGTTTAGTAGTTCTGCTCAAAATAATAAAACTCAAGGAACATTCCTAAAAAGGGATGACCCAAAAATAGATGCATTAATGCAACAAGCAGAGTTGCTGAGCTCACTAGCTCAAAATATTGATACAGAGGACATCGACCAAAGTCTTGAAAACACGTGGAAGGTGAACCTCCATAATCTCTTGGCCTGTATTGTTTTGATTTTGAGCATTGAGCACGTTATGTTTTTGCAAATGGATCTGTATGAAGACTCTCCAGCCAGTTCTGAATACAGTACAGGATCAACTATCCTCCCTCTCTCAGCTGGTGACATTATGGAACACTCTTCACACCGGGATATAGAAACTGAAATGAAAACCACACAAATTGAAGATAAGAAAGAAGTAGATGGATGTGAGAGAGGTGTTCTAGTTACTGCAACCCTAGATCAAGTAGATATGCTGCCGAATTCGAAAGAACAAATAAACAATGATAGCGCTGTTTCTGCCTCATCAAGAGTGGAGTTTGGTTCCCCTGTTCAAGTAACTCCGATATTCAGATCTTTGGCTACAGGGATTCCCAGCCCACAATTTTCGGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAGTCTCCATCTCTCAACCCAAGTGCTCAAGCATCACAACCGCCACCCTGCAAAAAAGCCCTACTAGACAGTTTACAATCCTAG 1347 0.395 MKKQEEQCNRESKKGHIVTWTQEEDDILREQIGIHGTENWEIIASKFKDKMTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKLYGNRWTEIGKVVSGRTDNAVKNRFSMLCRKRQKYEALAKENSISSHINSNNKKIVFQHAYNTDATSESAISIKKTRRAHITDDGGKIKFGDRSHLQNGTLINQHPRTPFAVLAQNSQNINNLLDELQICNAKFSSSAQNNKTQGTFLKRDDPKIDALMQQAELLSSLAQNIDTEDIDQSLENTWKVNLHNLLACIVLILSIEHVMFLQMDLYEDSPASSEYSTGSTILPLSAGDIMEHSSHRDIETEMKTTQIEDKKEVDGCERGVLVTATLDQVDMLPNSKEQINNDSAVSASSRVEFGSPVQVTPIFRSLATGIPSPQFSESERNFLRKTLGVESPSLNPSAQASQPPPCKKALLDSLQS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01229 448 Pfam Myb-like DNA-binding domain 20 80 - -
Aip02g01229 448 Coils Coil 198 218 - -
Aip02g01229 448 CDD SANT 72 110 IPR001005 -
Aip02g01229 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Aip02g01229 448 SUPERFAMILY Homeodomain-like 19 110 IPR009057 -
Aip02g01229 448 Gene3D - 71 144 - -
Aip02g01229 448 Gene3D - 7 68 - -
Aip02g01229 448 PANTHER MYB PROTEIN-RELATED 10 271 - -
Aip02g01229 448 PANTHER MYB PROTEIN-RELATED 294 443 - -
Aip02g01229 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 63 IPR017930 -
Aip02g01229 448 ProSiteProfiles Myb-like domain profile. 20 63 IPR001005 -
Aip02g01229 448 PANTHER TRANSCRIPTION FACTOR MYB88 10 271 - -
Aip02g01229 448 PANTHER TRANSCRIPTION FACTOR MYB88 294 443 - -
Aip02g01229 448 CDD SANT 19 63 IPR001005 -
Aip02g01229 448 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Aip02g01229 448 MobiDBLite consensus disorder prediction 421 448 - -
Aip02g01229 448 SMART sant 16 65 IPR001005 -
Aip02g01229 448 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01229 Aip-Chr2 26391234 26394651 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01229 13 272 MYB Transcription Factor Family AT2G02820 59.924 4.84e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip02g01229 Myb_DNA-bind_6 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01229 K09422 - gmx:100807667 585.489