Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01216 ATGGGAGAAGAAGCTCTTTGTGTTCAAGCTTTAGCAGATGGAGAGAAGGAAAACAATGAGGAATTAAGGACGGAACTAAAGAGGAACTACGACCAATGTGATGCTGACACAACTGAGTCTCCTAATAAGAAACAAGCGAAGGAAGTTTCCAATGATGAATTGCGCTCTGAAGTTTTCAACCCGAACATTTCTGTGACTGAGAATGCTTTAGCTTTTCAGGATATTAGTAGCCAGCCCACGGAATCGGGAAATGGTAACCCTGCAGAGTGTGGGGAACTAACGTCCACTTGTTTTGAGAATTCAAGCTCTGATGAGACCTTAAGTGATGAAGCTGGTGATCACAATATCAATAGCACTTTTCGGAGTGATAAGGACCCCAGTAGCTCCGCAATTTCTTCTTGTGTTGTACTGGAGATTCCGAAGCATGTTAGTTCAACTGGGATTAGAAAAATTACTTTTAAGTTCAGTAAGAAGAAGGAGGACTATGATTACCAATCACCTGCTCCAACTTATAGACCTGCTGGCTTTCCTGAAGGCAGTAATCCCTATGGTTTTCATGGGGATGATGAGGAATATATGGCAAGGGCTGATTATAGTGGTGGGTCGTTGGAGAGCCTGGGTGGAATGGGATATGCTCAAAATGGAGATTTCGACTTGTACACTCGCAACATGGAGTTGAAGATGTCGAAAAAGGTAGTCCCCAACTGCTACCCCACAAATGTCAAGAAGCTGTTATCAACTGGTATCCTTGATGGAGCTCTAGTGAAGTATATTTACAACCCGGGAAAGGTTGAACTACCTGGGATTATTGATGGTGGTGGATATTTGTGTGGCTGTTCCATGTGCAATTATTCCAGAGTGCTTAGTGCCTACGAGTTCGAGCAGCATGCTGGTGCCAAGACTAGGCACCCAAATAATCACATATACCTAGAGAATGGAAGACCGATATATAGTATTATCCAAGAAATAAAAACTGCTCCACTCAGCATTCTAGATGAGGTTATAAAAAATGTCGCTGGTTCATCTGTCAACGAGGAGTCCTTTTTAGTATGGAAAGAAAGTATTTTACAAAGCAATGAGAGGGCTCAGGGTTATAAGAATTATGGCACCAAGCTTACTGGCATGCCTCATAAGAAGACAAGCCAATCTGTGGAAATTTTCGGTCAGTTGTCTTCTATCCATGTGCCAAGTCATTTTGAGCAACAATTGAATGTGAAGCAGACAACTGACGAGTGGAAACCTGTGGTAAAAAGAAGTGCTGATGGTTGCACTAAAAGAAGGGACAATGATTTACACAGGTTACTCTTTATGCCAAATGGACTACCAGATGGTGCTGAATTGGCTTATTATGTTAAAGGACAGAGAATACTTAGTGGTTACAAACAGGGAAATGGGATAGTCTGTAGTCATTGTGATATAGAGATAAGTCCATCACAATTTGAAGCCCATGCTGGAATGGCTGCGAGACGCCAACCTTACCGACACATATACACATCCAATGGGTTGACACTTCATGATATAGCTCTGTCTTTGGCAAATGGTCAAAACCTGATGACGGGACATAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATCTGGTTCTTTGCAATCAATGCCCCAGAGCTTTTCATGCAGCATGCTTGGGTTTTGAGTGTGTTCCAGAAACAAGTTGGCGTTGTCTAAATTGTAGAAATAGTGCTGGTAATGGAAGAGAATCTTCTATGATGACATCAAGTATGATACGGTTGACACGGGTTGATAAAGCACCTGAGTTTGAAATGGGAGGATGTGTTGTCTGCAGGGCAAACGATTTCAGTGTGTCTAAGTTTGATGAGCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTACGGGAGATTGGCCTTTGTGAGTTGGAAGAACTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATAGAATATATGTGGCTCTCCAGAATTCAGTTTTTGCTGGACCTGCCATTATACCAGTCTCCTTGTCAGAACTAATAATAAGGAAACACGAGGAAAAGGGACTATTTACCTACGGAGGCATGAATGATATCAAGTGGAGAATCTTAAGTGGAAAAAGCCGTTATCCGGAGCATTTGCCATTACTTTCTCGTGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCTACATCTGGACGTGATCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTCGGAGGGATGTATTGCATTGTTCTAATTGTCAATTCTGTTGTTGTATCTGCTGGGCTGCTTAGGATTTTTGGTAGTACTGTTGCTGAGCTTCCACTGGTAGCTACTAGCAGAGAACATCAAGGAAAGGGTTATTTCCAAGTGTTATTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTCAATGTAGAAAAGTTGGTGCTTCCTGCAGCTGGGGATGCAGAGTCAATTTGGACTAAAAAACTAGGCTTCAGAAAGATGAGTGAAGATCAGTTATCCAAATATCTTAAGGAGGTGCAGCTAACCCTGTTCAATAAAACATCAATGCTTGAGAAGAGAGTGCAGCTTGCGATAGAATGA 2613 0.4214 MGEEALCVQALADGEKENNEELRTELKRNYDQCDADTTESPNKKQAKEVSNDELRSEVFNPNISVTENALAFQDISSQPTESGNGNPAECGELTSTCFENSSSDETLSDEAGDHNINSTFRSDKDPSSSAISSCVVLEIPKHVSSTGIRKITFKFSKKKEDYDYQSPAPTYRPAGFPEGSNPYGFHGDDEEYMARADYSGGSLESLGGMGYAQNGDFDLYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGALVKYIYNPGKVELPGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIYLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFLVWKESILQSNERAQGYKNYGTKLTGMPHKKTSQSVEIFGQLSSIHVPSHFEQQLNVKQTTDEWKPVVKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQRILSGYKQGNGIVCSHCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLMTGHSDDMCAVCGDGGDLVLCNQCPRAFHAACLGFECVPETSWRCLNCRNSAGNGRESSMMTSSMIRLTRVDKAPEFEMGGCVVCRANDFSVSKFDERTVIICDQCEKEYHVGCLREIGLCELEELPKDKWFCCDDCNRIYVALQNSVFAGPAIIPVSLSELIIRKHEEKGLFTYGGMNDIKWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVATSGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGSTVAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLKEVQLTLFNKTSMLEKRVQLAIE 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01216 870 ProSitePatterns Zinc finger PHD-type signature. 599 654 IPR019786 -
Aip02g01216 870 MobiDBLite consensus disorder prediction 1 57 - -
Aip02g01216 870 Pfam Tify domain binding domain 459 508 IPR032308 -
Aip02g01216 870 Pfam Tify domain binding domain 268 322 IPR032308 -
Aip02g01216 870 Gene3D - 696 864 - -
Aip02g01216 870 ProSiteProfiles Zinc finger PHD-type profile. 523 568 IPR019787 -
Aip02g01216 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 595 IPR013083 -
Aip02g01216 870 MobiDBLite consensus disorder prediction 76 105 - -
Aip02g01216 870 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 3 866 - -
Aip02g01216 870 Coils Coil 12 32 - -
Aip02g01216 870 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 698 857 IPR000182 GO:0016407
Aip02g01216 870 MobiDBLite consensus disorder prediction 14 54 - -
Aip02g01216 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 657 IPR013083 -
Aip02g01216 870 PANTHER AUTOIMMUNE REGULATOR 3 866 - -
Aip02g01216 870 Pfam PHD-finger 525 567 IPR019787 -
Aip02g01216 870 SUPERFAMILY FYVE/PHD zinc finger 521 570 IPR011011 -
Aip02g01216 870 ProSitePatterns Zinc finger PHD-type signature. 526 565 IPR019786 -
Aip02g01216 870 SUPERFAMILY FYVE/PHD zinc finger 597 652 IPR011011 -
Aip02g01216 870 MobiDBLite consensus disorder prediction 76 125 - -
Aip02g01216 870 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 754 840 IPR016181 -
Aip02g01216 870 CDD NAT_SF 758 819 - -
Aip02g01216 870 SMART PHD_3 598 655 IPR001965 -
Aip02g01216 870 SMART PHD_3 525 566 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01216 Aip-Chr2 26105801 26113296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01216 1 865 PHD Transcription Factor Family AT3G53680 52.009 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip02g01216 TDBD 9.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01216 - - gmx:100808999 1461.82