Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01210 ATGTATAAGCCATCTTGGCCGAAATATGAGGGTGATGGAACAAAGGATGTTGATATTGAATTTTCGGAAGCGAAAAAACAAGCCCGTGGCTCGACATCTACAAAGAGATCTCGTGCAGCAGAGGTCCATAATCTTTCAGAAAGGAGGCGTCGAGATAGAATTAATGAAAGGATGAGAGCTTTGCAAGAACTTATACTTCGGTGCAACAAGTCTGACAAAGCATCCATGCTGGATGAAGCAATCGAATACTTGAAGTCACTAAAGTTACAAGTACAGATGATGTCCATGGGATACAGCATGCTACCGATGATGTTCTCCGGAATCCAGCAGTATATACACTCAATAGGAATGGGGATTGGAATGGGTATGGGCGTGGAAATGGGAATGAACAGACCAGTAATGCCATTTCCCAACATGTTAGCTGGTTCTGCTTTGCCACCAGCAACTCCTTCAGGTGCTCCTCATTTGGGACCAAGATTCCCTTTGCCCCCTTTGCATATGCCCCATGTTGATGCATCAAGAATGCAAGTGCAAAACCTGCCAGATAATCATAATGTGCCTACCTCAATTAGTACATCGGATCCAGCAGCTCAATCATCAGCAATACCTTGGTCCACACCAGATAAATTTACATTTAATGCAGGCAATGAACCAATCCAACGCCACCAAACCAAGCACTAG 681 0.442 MYKPSWPKYEGDGTKDVDIEFSEAKKQARGSTSTKRSRAAEVHNLSERRRRDRINERMRALQELILRCNKSDKASMLDEAIEYLKSLKLQVQMMSMGYSMLPMMFSGIQQYIHSIGMGIGMGMGVEMGMNRPVMPFPNMLAGSALPPATPSGAPHLGPRFPLPPLHMPHVDASRMQVQNLPDNHNVPTSISTSDPAAQSSAIPWSTPDKFTFNAGNEPIQRHQTKH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01210 226 MobiDBLite consensus disorder prediction 23 46 - -
Aip02g01210 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Aip02g01210 226 Pfam Helix-loop-helix DNA-binding domain 42 88 IPR011598 GO:0046983
Aip02g01210 226 CDD bHLH_AtPIF_like 38 100 - -
Aip02g01210 226 SMART finulus 44 93 IPR011598 GO:0046983
Aip02g01210 226 MobiDBLite consensus disorder prediction 179 219 - -
Aip02g01210 226 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 15 203 - -
Aip02g01210 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 116 IPR036638 GO:0046983
Aip02g01210 226 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 15 203 IPR031066 -
Aip02g01210 226 Gene3D - 33 96 IPR036638 GO:0046983
Aip02g01210 226 MobiDBLite consensus disorder prediction 179 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01210 Aip-Chr2 25931945 25935456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01210 22 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 83.562 6.73e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g01210 HLH 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01210 - - aip:107627063 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01210 02 25931945 25935456 Aip02g01210 02 25931945 25935456 ECH