Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01180 ATGAGGACCCGAAATGCTGATTCCTCTTCCAAATCCACAACCCCGAAGAAGGCACCGCCGGCGAGAAAAACCGCCGCAAAATCCGCCGGAGAATCCCCTGCAGCAAAGCGCAATTCCACCGTCAAAACAAGGCAGATCAAGAAGAAGGAGGCCTCTCCCGCTTCCAACTCGATTCCCGATTCCAATCCCGATGAGCCGAATTCAGATGAGGTTGTTACCACTACACCGTGTTCAAAGAGGAAGCCAGGGAGACCAAGAACTAAAGCAGTTGCCACACCTAAGCTGGAGGAAGAACTGAAGGCAGTGGCTGATGAAACTCTAGTTGTGGATAACTCTGGGGATGTGGAGGAAGCGGAAAAGCCTCAAAATGTTGAAGTTGTCGATGCTGATAATATCGATCACGAGAAAGAGGGGCACCTGGAACAAGTTGTTGAATGTGTTGGACAATCTGAAGAGAAGGAACAAAAGTCTATGGAAGTGGATGAAACTGTGAAGGGAAACAATGCAGTGGAGGCTGAAGCGACTGCTTCTCAGGATGCCACTATGTCTTCCAAACAACCTGAGCGAACTCTTGTGGACCTAAATATATCGGTGAATGAAGATGATTCTATGTGTCAAAAGGAGGGAGAGAAAGAAGATGAAGAGTTGAATGAAAGGGACGGTCGGGAAGAGTTGAAGGATCAGGAACAAGAGAAAGGAGATGTAGAGTTGAAAGAACAAGAGGGAGAGAAAGGAGGGGAGGAGCTGAAGGAACAGGAGGCAGTGAATGTAAAGGAAGAACTGAAAGAAGAGGACGGAGATAAAGGAAAGGAAGAAGTCAAAGATGACGAAGGAGAAACAGCAAAGGAAGAAACAAAGGAAGAGGAAACAAACATTACTGGACACAAAGAATGCTCTAATACTGATAGTGCAGTAATGAAAGACCAGTCGAAGGAAGATTTTAATACTAGAAAAGTTGGTGATGAAGTGACAGAGAGCAGTGAAAGGCTGGATTTTGAAGAACATGGTGGGGAGGATATTGAGGAAGATCCAGAGGAAGGTCCATGGGAACCTCCTGAAGAAAATGAGGCGCTCCAAGAGGAGCATACGGAATTGGAGGCCATTGCAAACCAGCGAAAGAGTAACAAAGAACATGAGATATTTGTTGGAGGGCTTGACCGTGATGCTACAGAGGAAGATCTGAGAAAAGTTTTTAAGAGGATTGGGGAGGTAGTTGATGTCAGGTTGCATAAGAATTCATCAACAAATAAAAATAAGGGCTATGCATTTGTGAGGTTTGCTAATAAGGAACATGCTAAGAGAGCATTGTCAGAAATGAAGAACCCAGTTATACGTGGTAAAAGATGTGGGACTGCACCCAGCGAGGATAACAACACATTATTCTTGGGAAATATTTGCAATACGTGGACGAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTATTGATGGGGTTGAAAACATTACGCTTGTGCTAGATGCTAAATGTGAAGGATTGAGCCGTGGCTTTGCATTCCTTGAGTTTTCTAGTCATGGTGATGCAATGCTTGCGTACAAGAGGCTTCAAAAGCCTGACGCGATCTTTGGGCATCCTGAGAGAAGTGCCAAGGTAGCCTTTGCTGAGCCTATGCGTGAACCAGACCCAGAGATAATGGCACAGGTTAAATCTGTGTTTATTAATGGTCTTCCTCCTCACTGGGAAGAAGATCACATCAGGGAGATGCTTAAATCTTATGGTGAAATTGTAAGAATTGTACTAGCAAGGAATATATCTACAGCCAAGAGGAAGGATTATGGATTTGTTGATTTCTCAACACATGAAGCTGCTGTTGCATGTGTTGAAGCTGTAAATAAGTCTGAATTGGGTGATGGGGCATCAAAGGTATCATTTAATTTGTTTACTTGA 1908 0.4403 MRTRNADSSSKSTTPKKAPPARKTAAKSAGESPAAKRNSTVKTRQIKKKEASPASNSIPDSNPDEPNSDEVVTTTPCSKRKPGRPRTKAVATPKLEEELKAVADETLVVDNSGDVEEAEKPQNVEVVDADNIDHEKEGHLEQVVECVGQSEEKEQKSMEVDETVKGNNAVEAEATASQDATMSSKQPERTLVDLNISVNEDDSMCQKEGEKEDEELNERDGREELKDQEQEKGDVELKEQEGEKGGEELKEQEAVNVKEELKEEDGDKGKEEVKDDEGETAKEETKEEETNITGHKECSNTDSAVMKDQSKEDFNTRKVGDEVTESSERLDFEEHGGEDIEEDPEEGPWEPPEENEALQEEHTELEAIANQRKSNKEHEIFVGGLDRDATEEDLRKVFKRIGEVVDVRLHKNSSTNKNKGYAFVRFANKEHAKRALSEMKNPVIRGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVLDAKCEGLSRGFAFLEFSSHGDAMLAYKRLQKPDAIFGHPERSAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWEEDHIREMLKSYGEIVRIVLARNISTAKRKDYGFVDFSTHEAAVACVEAVNKSELGDGASKVSFNLFT 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01180 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 460 524 IPR000504 GO:0003723
Aip02g01180 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 448 IPR000504 GO:0003723
Aip02g01180 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 558 624 IPR000504 GO:0003723
Aip02g01180 635 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 355 628 - -
Aip02g01180 635 MobiDBLite consensus disorder prediction 149 360 - -
Aip02g01180 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 456 IPR000504 GO:0003723
Aip02g01180 635 Gene3D - 457 541 IPR012677 -
Aip02g01180 635 MobiDBLite consensus disorder prediction 170 202 - -
Aip02g01180 635 SUPERFAMILY RNA-binding domain, RBD 455 631 IPR035979 GO:0003676
Aip02g01180 635 Coils Coil 355 375 - -
Aip02g01180 635 CDD RRM_SF 558 630 - -
Aip02g01180 635 SUPERFAMILY RNA-binding domain, RBD 362 449 IPR035979 GO:0003676
Aip02g01180 635 Coils Coil 211 231 - -
Aip02g01180 635 MobiDBLite consensus disorder prediction 335 354 - -
Aip02g01180 635 MobiDBLite consensus disorder prediction 306 334 - -
Aip02g01180 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 556 635 IPR000504 GO:0003723
Aip02g01180 635 MobiDBLite consensus disorder prediction 1 97 - -
Aip02g01180 635 MobiDBLite consensus disorder prediction 50 75 - -
Aip02g01180 635 Gene3D - 542 633 IPR012677 -
Aip02g01180 635 Gene3D - 350 456 IPR012677 -
Aip02g01180 635 CDD RRM_SF 460 523 - -
Aip02g01180 635 CDD RRM_SF 380 448 - -
Aip02g01180 635 MobiDBLite consensus disorder prediction 203 295 - -
Aip02g01180 635 PANTHER NUCLEOLIN-LIKE ISOFORM X1 355 628 - -
Aip02g01180 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 458 543 IPR000504 GO:0003723
Aip02g01180 635 SMART rrm1_1 379 452 IPR000504 GO:0003723
Aip02g01180 635 SMART rrm1_1 459 536 IPR000504 GO:0003723
Aip02g01180 635 SMART rrm1_1 557 630 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01180 Aip-Chr2 23761793 23764299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01180 367 624 Eukaryotic Initiation Factors Gene Family AT1G22760 26.937 1.12e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01180 - - aip:107627051 1122.46