Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01157 ATGCAGAAGAAAGAGTGGCCTGGAGAGCAATTATGGGTTTTTGTAGTTCAAATTCTGGTTCAAAGCTACACTGCAAGTCTTACCTCTCTCTTAACAGTTGAACGACTTCGCCCAGCATTTACAGATGTTCATCAACTCTTAAAGAATCAGTTGAATGTTGGTTATTTAGAAGCTTCTTTTGTTCATGAAATCTTGAAGGATTTGCGGTTCCATGAAAACCAGCTTAAGATATATAAATCTACAGAAGAATGCAATGATCTCTTCACAAAAGAAAGTGCTAATGGTGGTATCGATGCGGCGTTTGACGAAGTCCCTTATGTGATGCACCTTCTTGGAACTTATTGCTCCAAGTATGCGATGGTTGATCCAAGATTTAAAACTGGTGGCTTTGGCTTTTCCTCATTATCTTTTTGGCCAATACTAGCGTGTCGAAGACCTAAAATTTCACCAGCTGCCGAAATGATTTGTCACGATGGAGAGAAGAACGCGTGCAGGAGTGGGTACAACACGCGCAGGGAGGGGCTGATTCTTTTGCAAGAGTAA 543 0.4144 MQKKEWPGEQLWVFVVQILVQSYTASLTSLLTVERLRPAFTDVHQLLKNQLNVGYLEASFVHEILKDLRFHENQLKIYKSTEECNDLFTKESANGGIDAAFDEVPYVMHLLGTYCSKYAMVDPRFKTGGFGFSSLSFWPILACRRPKISPAAEMICHDGEKNACRSGYNTRREGLILLQE 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01157 180 Pfam Ligand-gated ion channel 11 100 IPR001320 GO:0015276|GO:0016020
Aip02g01157 180 SUPERFAMILY Periplasmic binding protein-like II 21 132 - -
Aip02g01157 180 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 132 - -
Aip02g01157 180 Gene3D - 10 81 - -
Aip02g01157 180 PANTHER GLUTAMATE RECEPTOR 2.9 11 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01157 Aip-Chr2 23302700 23304230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01157 11 169 Ion Channels AT5G11210 44.654 3.84e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01157 K05387 - rcu:8265217 175.637