Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01050 ATGATCCCCAAAAATCAATTGAGTTACTTGGAGTTAAGTTGTGGTGGTGGTGGTGATAGCGGTAAAAGGGTGAGATTTTCTGCAGAGGTATCGCATGAAAGACTCTGTGTTCTTGAAACAATGGTTCAGTTTGCGATTGGAAAGGCGTGTGAAGAGAGAAAATGGGCGGTGGAGATTCGCGATCCAAGAAAAGGTGTTCGCGTTTGTCTTGGAACCTTCAACACCACCAGAGAAGCCACCAGGGCCTATGACAGAGAAGCTCGTAAGATTTGCGGAAAGAAAGCAAAAGTGAATTTCCCCAACGAGGATGACGAACCTTCCTCCTCCTCCAATTTGAAGATCGAGTAA 348 0.4569 MIPKNQLSYLELSCGGGGDSGKRVRFSAEVSHERLCVLETMVQFAIGKACEERKWAVEIRDPRKGVRVCLGTFNTTREATRAYDREARKICGKKAKVNFPNEDDEPSSSSNLKIE 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01050 115 PANTHER DNA-BINDING DOMAIN 54 110 IPR044808 GO:0003700|GO:0009873
Aip02g01050 115 CDD AP2 54 101 IPR001471 GO:0003700|GO:0006355
Aip02g01050 115 SUPERFAMILY DNA-binding domain 52 101 IPR016177 GO:0003677
Aip02g01050 115 ProSiteProfiles AP2/ERF domain profile. 42 100 IPR001471 GO:0003700|GO:0006355
Aip02g01050 115 Gene3D AP2/ERF domain 48 101 IPR036955 GO:0003700|GO:0006355
Aip02g01050 115 SMART rav1_2 54 106 IPR001471 GO:0003700|GO:0006355
Aip02g01050 115 PANTHER EREBP TRANSCRIPTION FACTOR 54 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01050 Aip-Chr2 19366111 19366715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01050 54 102 AP2-EREBP Transcription Factor Family AT1G72360 73.469 9.67e-20 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01050 K09286 - tcc:18613616 99.3673