Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01025 ATGGCTTGCTATCTTATACTTCTACCATGTCCATGTGTGGATTTTCCCTTTTCTGTGCATGAACTGCGAGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATATTCTTCTCCTTGGGGACGATCCGTGGGAATCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAAAAGATGGGAGATCAAGGCGTAGAATCTCGCGACAGTGCTCCCGGCCTACCATCAATAGGCGATTACTGA 315 0.4444 MACYLILLPCPCVDFPFSVHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSPEDIQKMGDQGVESRDSAPGLPSIGDY 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01025 104 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 95 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip02g01025 104 SUPERFAMILY CAD & PB1 domains 12 70 - -
Aip02g01025 104 ProSiteProfiles PB1 domain profile. 1 80 IPR000270 GO:0005515
Aip02g01025 104 Gene3D - 17 85 - -
Aip02g01025 104 Pfam AUX/IAA family 33 81 IPR033389 -
Aip02g01025 104 MobiDBLite consensus disorder prediction 84 104 - -
Aip02g01025 104 PANTHER AUXIN RESPONSE FACTOR 8 18 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01025 Aip-Chr2 18927872 18928762 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01025 18 100 B3 DNA Binding Superfamily AT5G37020 77.108 5.57e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aip02g01025 AUX_IAA 7.5e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01025 - - adu:107458034 172.17