Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01021 ATGAAGCTTTCAACATCAGGGTTGCCTCAGCAGGGACAACATGAAGGAGGGGAGAAGAAGTGCTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCATTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAGTTGATGGCCACATACCGAATTACCCGAGCTTGCCTCCCCAGTTGATTTGCCAACTTCACAATGTCACGATGCATGCAGATGTTGAAACAGATGAAGTTTATGCCCAAATGACACTGCAGCCGTTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCCATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACCTTAACTGCTAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCGCGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCATTGCAACCGCCTGCACAAGAACTAATTGCTAGAGATCTCCATGATGTTGAGTGGAAATTTCGTCATATTTTTAGGGGTAAGGAGAATGATATTCTTCTCCTTGGGGACGATCCGTGGGAATCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAAAAGATGGGAGATCAAGGCGTAGAATCTCGCGACAGTGCTCCCGGCCTACCATCAATAGGGGATTACTGA 726 0.4669 MKLSTSGLPQQGQHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGKENDILLLGDDPWESFVNNVWYIKILSPEDIQKMGDQGVESRDSAPGLPSIGDY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01021 241 CDD B3_DNA 128 205 IPR003340 GO:0003677
Aip02g01021 241 Pfam B3 DNA binding domain 129 205 IPR003340 GO:0003677
Aip02g01021 241 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 188 231 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip02g01021 241 PANTHER AUXIN RESPONSE FACTOR 8 1 188 - -
Aip02g01021 241 SMART B3_2 129 216 IPR003340 GO:0003677
Aip02g01021 241 PANTHER AUXIN RESPONSE FACTOR 8 188 231 - -
Aip02g01021 241 SUPERFAMILY DNA-binding pseudobarrel domain 113 188 IPR015300 -
Aip02g01021 241 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 188 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip02g01021 241 Gene3D - 127 207 IPR015300 -
Aip02g01021 241 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01021 Aip-Chr2 18890112 18892045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01021 184 240 B3 DNA Binding Superfamily AT1G30330 53.968 2.66e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip02g01021 B3 5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01021 - - aip:110268759 395.201