Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01018 ATGCCAACTAAGGTTCTTCACATCACTACCAGGAAATCCCCCTGTGGTGAAGGTACCAACACCTGGGACAGATTCGAACTACGTGTTCACAAGAGGGTCATCGACCTCTACAGTTCCCCTGATGTTGTTAAGCAGATTACTTCAATCACAATCGAGCCTGGTGTTGAGGTTGAGGTCACAATTGCAGATGCTTGA 195 0.4718 MPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01018 64 Gene3D Ribosomal protein S10 domain 1 63 IPR036838 -
Aip02g01018 64 PANTHER RIBOSOMAL PROTEIN S10-RELATED 1 63 - -
Aip02g01018 64 SUPERFAMILY Ribosomal protein S10 1 61 IPR036838 -
Aip02g01018 64 Pfam Ribosomal protein S10p/S20e 1 60 IPR027486 -
Aip02g01018 64 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 63 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aip02g01018 64 SMART Ribosomal_S10_2 1 60 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01018 Aip-Chr2 18810286 18811206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01018 1 64 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 93.750 1.71e-40 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01018 K02969 - gmx:100500179 132.494